RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 FOXD2O60548 495 aaPredicted RBP18.67■□□□□ 0.58
VPS29-204ENST00000548259 USO1O60763 962 aaKnown RBP18.67■□□□□ 0.58
VPS29-204ENST00000548259 LRP3O75074 770 aa18.67■□□□□ 0.58
VPS29-204ENST00000548259 RECQL4O94761 1208 aa18.67■□□□□ 0.58
VPS29-204ENST00000548259 RHOP08100 348 aa18.67■□□□□ 0.58
VPS29-204ENST00000548259 FGFR3P22607 806 aa18.67■□□□□ 0.58
VPS29-204ENST00000548259 RBM25P49756 843 aaKnown RBP18.67■□□□□ 0.58
VPS29-204ENST00000548259 CCR3P51677 355 aa18.67■□□□□ 0.58
VPS29-204ENST00000548259 MTAPQ13126 283 aa18.67■□□□□ 0.58
VPS29-204ENST00000548259 TSSK4Q6SA08 328 aa18.67■□□□□ 0.58
VPS29-204ENST00000548259 MAMSTRQ6ZN01 415 aa18.67■□□□□ 0.58
VPS29-204ENST00000548259 NETO1Q8TDF5 533 aa18.67■□□□□ 0.58
VPS29-204ENST00000548259 IRF7Q92985 503 aa18.67■□□□□ 0.58
VPS29-204ENST00000548259 UROC1Q96N76 676 aa18.67■□□□□ 0.58
VPS29-204ENST00000548259 ZFP14Q9HCL3 533 aa18.67■□□□□ 0.58
VPS29-204ENST00000548259 SPTBN2O15020 2390 aa18.66■□□□□ 0.58
VPS29-204ENST00000548259 PTGESO14684 152 aa18.66■□□□□ 0.58
VPS29-204ENST00000548259 ST3GAL2Q16842 350 aa18.66■□□□□ 0.58
VPS29-204ENST00000548259 DCAF4L1Q3SXM0 396 aa18.66■□□□□ 0.58
VPS29-204ENST00000548259 TRMT61BQ9BVS5 477 aaKnown RBP18.66■□□□□ 0.58
VPS29-204ENST00000548259 CHRDQ9H2X0 955 aa18.66■□□□□ 0.58
VPS29-204ENST00000548259 FZD8Q9H461 694 aa18.66■□□□□ 0.58
VPS29-204ENST00000548259 PDZD7Q9H5P4 517 aa18.66■□□□□ 0.58
VPS29-204ENST00000548259 TTC12Q9H892 705 aaPredicted RBP18.66■□□□□ 0.58
VPS29-204ENST00000548259 NDRG2Q9UN36 371 aaKnown RBP18.66■□□□□ 0.58
VPS29-204ENST00000548259 STK36Q9NRP7 1315 aa18.66■□□□□ 0.58
VPS29-204ENST00000548259 TDRD15B5MCY1 1934 aaKnown RBP18.66■□□□□ 0.58
VPS29-204ENST00000548259 MIA3Q5JRA6 1907 aa18.65■□□□□ 0.58
VPS29-204ENST00000548259 EPB41L2O43491 1005 aaKnown RBP18.65■□□□□ 0.58
VPS29-204ENST00000548259 RETP07949 1114 aa18.65■□□□□ 0.58
VPS29-204ENST00000548259 ADRB1P08588 477 aa18.65■□□□□ 0.58
VPS29-204ENST00000548259 ATP2B1P20020 1258 aa18.65■□□□□ 0.58
VPS29-204ENST00000548259 CDCA2Q69YH5 1023 aaPredicted RBP18.65■□□□□ 0.58
VPS29-204ENST00000548259 MAEAQ7L5Y9 396 aa18.65■□□□□ 0.58
VPS29-204ENST00000548259 ELMOD1Q8N336 334 aa18.65■□□□□ 0.58
VPS29-204ENST00000548259 DEPTORQ8TB45 409 aa18.65■□□□□ 0.58
VPS29-204ENST00000548259 PIGOQ8TEQ8 1089 aa18.65■□□□□ 0.58
VPS29-204ENST00000548259 DDX1Q92499 740 aaKnown RBP18.65■□□□□ 0.58
VPS29-204ENST00000548259 CHAMP1Q96JM3 812 aa18.65■□□□□ 0.58
VPS29-204ENST00000548259 ACKR2O00590 384 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 MICAL2O94851 1124 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 PRKCBP05771 671 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 KRT2P35908 639 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 PPP2R5AQ15172 486 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 CYP4A22Q5TCH4 519 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 TANGO2Q6ICL3 276 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 IQCEQ6IPM2 695 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 C1orf228Q6PIY5 440 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 NOSTRINQ8IVI9 506 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 ZNF461Q8TAF7 563 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 TM6SF1Q9BZW5 370 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 GDAQ9Y2T3 454 aa18.64■□□□□ 0.57
VPS29-204ENST00000548259 ARHGEF37A1IGU5 675 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 NEMFO60524 1076 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 TGM1P22735 817 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 TXKP42681 527 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 SPEM2Q0P670 501 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 NAB2Q15742 525 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 PRR23BQ6ZRT6 265 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 PDZD4Q76G19 769 aaPredicted RBP18.63■□□□□ 0.57
VPS29-204ENST00000548259 OXER1Q8TDS5 423 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 FAM3CQ92520 227 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 DDX27Q96GQ7 796 aaKnown RBP18.63■□□□□ 0.57
VPS29-204ENST00000548259 CORO1BQ9BR76 489 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 LARP6Q9BRS8 491 aaKnown RBP18.63■□□□□ 0.57
VPS29-204ENST00000548259 PLA2G2FQ9BZM2 168 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 GPRC5CQ9NQ84 441 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 TRPV5Q9NQA5 729 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 PDRG1Q9NUG6 133 aa18.63■□□□□ 0.57
VPS29-204ENST00000548259 MYH15Q9Y2K3 1946 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 H7C4K7 107 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 SLC30A4O14863 429 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 CEBPBP17676 345 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 LIG1P18858 919 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 TKTP29401 623 aaKnown RBP18.62■□□□□ 0.57
VPS29-204ENST00000548259 CNR2P34972 360 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 NAMPTP43490 491 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 CXCL12P48061 93 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 EFNA5P52803 228 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 YARSP54577 528 aaKnown RBP18.62■□□□□ 0.57
VPS29-204ENST00000548259 SLC5A9Q2M3M2 681 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 PPM1JQ5JR12 505 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 SLC8B1Q6J4K2 584 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 DEPDC1BQ8WUY9 529 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 MSANTD3Q96H12 275 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 NACC1Q96RE7 527 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 LMAN1LQ9HAT1 526 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 TUFT1Q9NNX1 390 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 PARD6AQ9NPB6 346 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 TOPORSQ9NS56 1045 aaPredicted RBP18.62■□□□□ 0.57
VPS29-204ENST00000548259 SLC38A7Q9NVC3 462 aa18.62■□□□□ 0.57
VPS29-204ENST00000548259 PSMC3P17980 439 aa18.61■□□□□ 0.57
VPS29-204ENST00000548259 CLCNKBP51801 687 aa18.61■□□□□ 0.57
VPS29-204ENST00000548259 FZD5Q13467 585 aa18.61■□□□□ 0.57
VPS29-204ENST00000548259 SIM2Q14190 667 aaPredicted RBP18.61■□□□□ 0.57
VPS29-204ENST00000548259 GRM2Q14416 872 aa18.61■□□□□ 0.57
VPS29-204ENST00000548259 LPAL2Q16609 132 aa18.61■□□□□ 0.57
VPS29-204ENST00000548259 SKAP1Q86WV1 359 aa18.61■□□□□ 0.57
VPS29-204ENST00000548259 LEMD2Q8NC56 503 aa18.61■□□□□ 0.57
VPS29-204ENST00000548259 SMARCD2Q92925 531 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms