RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PARP2Q9UGN5 583 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 FGFR1OPO95684 399 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 F2P00734 622 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 GNAT1P11488 350 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 SLC26A2P50443 739 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 COPB1P53618 953 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 RAPGEF1Q13905 1077 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 TCP11X2Q5H9J9 407 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 GLRA4Q5JXX5 417 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 ZBTB41Q5SVQ8 909 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 RSRC2Q7L4I2 434 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 CPLX4Q7Z7G2 160 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 CCDC170Q8IYT3 715 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 KIAA0319LQ8IZA0 1049 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 TMEM130Q8N3G9 435 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 ARRDC4Q8NCT1 418 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 TYW1Q9NV66 732 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 IGKV6D-21A0A0A0MT36 114 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 RBM47A0AV96 593 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 ZBTB42B2RXF5 422 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 MAGEB2O15479 319 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 AKAP3O75969 853 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 MYBL2P10244 700 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 HSPA8P11142 646 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 SSR1P43307 286 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 RANBP1P43487 201 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 CTCFP49711 727 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 MXD4Q14582 209 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 THEMIS2Q5TEJ8 643 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 EEF1DP3Q658K8 133 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 DNAJC5GQ8N7S2 189 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 UHMK1Q8TAS1 419 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 NIFKQ9BYG3 293 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 PSD3Q9NYI0 1048 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 HSPBP1Q9NZL4 362 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 INPP5FQ9Y2H2 1132 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 L3MBTL1Q9Y468 752 aa9.33□□□□□ -0.92
LIMCH1-209ENST00000509277 NRCAMQ92823 1304 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 HOXD13P35453 343 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 GJA9P57773 515 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 TFAMQ00059 246 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 FAM114A1Q8IWE2 563 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 ZNF513Q8N8E2 541 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 SEL1LQ9UBV2 794 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 TGFB1I1O43294 461 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 MUTP22033 750 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 NAMPTP43490 491 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 IRF5Q13568 498 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 MICALCLQ6ZW33 695 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 DPH6Q7L8W6 267 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 CACNA2D4Q7Z3S7 1137 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 TBC1D1Q86TI0 1168 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 SUGP1Q8IWZ8 645 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 U2AF1L4Q8WU68 220 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 DYDC1Q8WWB3 177 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 PAWRQ96IZ0 340 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 GCOM2Q9BZD3 368 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 TMEM206Q9H813 350 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 OLFML3Q9NRN5 406 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 SEPT11Q9NVA2 429 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 KCND2Q9NZV8 630 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 AGO2Q9UKV8 859 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 CDY2AQ9Y6F7 541 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 hCG_2014768A0A024R1R8 64 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 A0A1W2PQ45 241 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 A0A1W2PQY0 241 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 RRN3P2A6NIE6 340 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 MAP2K7O14733 419 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 IKBKBO14920 756 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 STX10O60499 249 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 TNFSF9P41273 254 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 TARBP2Q15633 366 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 ARHGAP44Q17R89 818 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 FAM133BQ5BKY9 247 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 CFAP58Q5T655 872 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 CENPPQ6IPU0 288 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 RSPH3Q86UC2 560 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 TC2NQ8N9U0 490 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 XXYLT1Q8NBI6 393 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 WNT8BQ93098 351 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 SAGE1Q9NXZ1 904 aa9.32□□□□□ -0.92
LIMCH1-209ENST00000509277 ADAMTS4O75173 837 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 NPTXRO95502 500 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 EDN1P05305 212 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 AKAP5P24588 427 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 ERFP50548 548 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 DLG4P78352 724 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 LRRC63Q05C16 580 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 ATF7IP2Q5U623 682 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 SPDYE1Q8NFV5 336 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 PXYLP1Q8TE99 480 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 SCLYQ96I15 445 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 ADPGKQ9BRR6 497 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 MRPL4Q9BYD3 311 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 TRIM31Q9BZY9 425 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 PCDHA2Q9Y5H9 948 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 RPS6KA5O75582 802 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 ATP1A1P05023 1023 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 ACTN1P12814 892 aa9.31□□□□□ -0.92
LIMCH1-209ENST00000509277 PSMC2P35998 433 aaKnown RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 142.1 ms