RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 ELNP15502 786 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 RXRAP19793 462 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 GRIA2P42262 883 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 NOVP48745 357 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 FLT3LGP49771 235 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 STAT2P52630 851 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 ZNF143P52747 638 aaPredicted RBP5.02□□□□□ -1.61
SF3B1-202ENST00000409915 KRT85P78386 507 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 IRX1P78414 480 aaPredicted RBP5.02□□□□□ -1.61
SF3B1-202ENST00000409915 TNFAIP2Q03169 654 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 ZNF252P-AS1Q0IIN9 211 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 FAPQ12884 760 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 COG2Q14746 738 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 NOLC1Q14978 699 aaKnown RBP eCLIP5.02□□□□□ -1.61
SF3B1-202ENST00000409915 TMEM132BQ14DG7 1078 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 LRRC14Q15048 493 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 LLGL1Q15334 1064 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 SEC23AQ15436 765 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 LMBRD2Q68DH5 695 aaPredicted RBP5.02□□□□□ -1.61
SF3B1-202ENST00000409915 FBXO46Q6PJ61 603 aaPredicted RBP5.02□□□□□ -1.61
SF3B1-202ENST00000409915 LBX2Q6XYB7 198 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 C4orf50Q6ZRC1 276 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 NLRC3Q7RTR2 1065 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 GPR142Q7Z601 462 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 GALNT5Q7Z7M9 940 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 IQCA1Q86XH1 822 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 VWA5B2Q8N398 1253 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 TXLNBQ8N3L3 684 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 ZBTB34Q8NCN2 500 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 REPS2Q8NFH8 660 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 DCAF4Q8WV16 495 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 BTN2A2Q8WVV5 523 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 HDAC2Q92769 488 aaKnown RBP5.02□□□□□ -1.61
SF3B1-202ENST00000409915 ERCC4Q92889 916 aaPredicted RBP5.02□□□□□ -1.61
SF3B1-202ENST00000409915 SNX21Q969T3 373 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 ABHD8Q96I13 439 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 GMCL1Q96IK5 515 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 TRERF1Q96PN7 1200 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 SLC9A7Q96T83 725 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 COL25A1Q9BXS0 654 aaPredicted RBP5.02□□□□□ -1.61
SF3B1-202ENST00000409915 MOV10L1Q9BXT6 1211 aaKnown RBP5.02□□□□□ -1.61
SF3B1-202ENST00000409915 GSX2Q9BZM3 304 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 SPATC1LQ9H0A9 340 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 UNC45AQ9H3U1 944 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 SMOC1Q9H4F8 434 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 KAT14Q9H8E8 782 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 CBX8Q9HC52 389 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 RAVER2Q9HCJ3 691 aaKnown RBP5.02□□□□□ -1.61
SF3B1-202ENST00000409915 CD248Q9HCU0 757 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 A1CFQ9NQ94 594 aaKnown RBP5.02□□□□□ -1.61
SF3B1-202ENST00000409915 ZNF446Q9NWS9 450 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 ARHGAP28Q9P2N2 729 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 SRRDQ9UH36 339 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 GJD2Q9UKL4 321 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 CEP131Q9UPN4 1083 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 CRYL1Q9Y2S2 319 aa5.02□□□□□ -1.61
SF3B1-202ENST00000409915 A0A096LPE4 126 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 A0A1W2PPZ6 126 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 TCRBV16S1A1N1A0A5B0 115 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 PABPN1LA6NDY0 278 aaKnown RBP5.01□□□□□ -1.61
SF3B1-202ENST00000409915 MYO1CO00159 1063 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 SH2B2O14492 632 aaPredicted RBP5.01□□□□□ -1.61
SF3B1-202ENST00000409915 TNFRSF10CO14798 259 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 PCDHGA12O60330 932 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 ULK1O75385 1050 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 ITGAVP06756 1048 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 THBS1P07996 1170 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 SNHG28P0DPA3 235 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 CYP2B6P20813 491 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 NME2P22392 152 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 HOXC13P31276 330 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 HSPA4P34932 840 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 UBA7P41226 1012 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 MAGEA8P43361 318 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 MAGEA9P43362 315 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 RNF144AP50876 292 aaPredicted RBP5.01□□□□□ -1.61
SF3B1-202ENST00000409915 SOX10P56693 466 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 PFKPQ01813 784 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 ROR1Q01973 937 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 PTPN11Q06124 597 aaPredicted RBP5.01□□□□□ -1.61
SF3B1-202ENST00000409915 PPP2R3AQ06190 1150 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 ZNF543Q08ER8 600 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 NCBP1Q09161 790 aaKnown RBP5.01□□□□□ -1.61
SF3B1-202ENST00000409915 POU4F2Q12837 409 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 SFSWAPQ12872 951 aaKnown RBP5.01□□□□□ -1.61
SF3B1-202ENST00000409915 WTAPQ15007 396 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 CCL14Q16627 93 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 SLC35G1Q2M3R5 365 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 SLC9C1Q4G0N8 1177 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 PRR16Q569H4 304 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 GNASQ5JWF2 1037 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 SPATA1Q5VX52 437 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 MCTP2Q6DN12 878 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 SNRNP48Q6IEG0 339 aaKnown RBP5.01□□□□□ -1.61
SF3B1-202ENST00000409915 SWSAP1Q6NVH7 229 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 ZCCHC8Q6NZY4 707 aaKnown RBP5.01□□□□□ -1.61
SF3B1-202ENST00000409915 SPOCD1Q6ZMY3 1216 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 LYSMD3Q7Z3D4 306 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 PLEKHH3Q7Z736 793 aa5.01□□□□□ -1.61
SF3B1-202ENST00000409915 ZNF227Q86WZ6 799 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms