RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W YCR100CP25606 316 aa3.9□□□□□ -1.79
SSH4YKL124W CAM1P29547 415 aaKnown RBP3.9□□□□□ -1.79
SSH4YKL124W SSE2P32590 693 aaKnown RBP3.9□□□□□ -1.79
SSH4YKL124W TCA17P32613 152 aa3.9□□□□□ -1.79
SSH4YKL124W ECT1P33412 323 aa3.9□□□□□ -1.79
SSH4YKL124W CLG1P35190 452 aa3.9□□□□□ -1.79
SSH4YKL124W SPC34P36131 295 aa3.9□□□□□ -1.79
SSH4YKL124W AIM3P38266 947 aaKnown RBP3.9□□□□□ -1.79
SSH4YKL124W PRS3P38689 320 aaKnown RBP3.9□□□□□ -1.79
SSH4YKL124W MTC6P38849 526 aa3.9□□□□□ -1.79
SSH4YKL124W KRE29P40026 464 aa3.9□□□□□ -1.79
SSH4YKL124W SPO73P40031 143 aa3.9□□□□□ -1.79
SSH4YKL124W BUD8P41698 603 aa3.9□□□□□ -1.79
SSH4YKL124W IDP2P41939 412 aa3.9□□□□□ -1.79
SSH4YKL124W CHA4P43634 648 aa3.9□□□□□ -1.79
SSH4YKL124W YHC3P47040 408 aa3.9□□□□□ -1.79
SSH4YKL124W CWC23P52868 283 aaPredicted RBP3.9□□□□□ -1.79
SSH4YKL124W NSA1P53136 463 aaPredicted RBP3.9□□□□□ -1.79
SSH4YKL124W YGL101WP53144 215 aa3.9□□□□□ -1.79
SSH4YKL124W PCP1P53259 346 aa3.9□□□□□ -1.79
SSH4YKL124W VOA1P53262 265 aa3.9□□□□□ -1.79
SSH4YKL124W BUD17P53727 317 aa3.9□□□□□ -1.79
SSH4YKL124W YNR062CP53748 327 aa3.9□□□□□ -1.79
SSH4YKL124W APM1Q00776 475 aaPredicted RBP3.9□□□□□ -1.79
SSH4YKL124W RXT3Q07458 294 aa3.9□□□□□ -1.79
SSH4YKL124W PAM18Q07914 168 aa3.9□□□□□ -1.79
SSH4YKL124W RFU1Q08003 200 aa3.9□□□□□ -1.79
SSH4YKL124W TIM9O74700 87 aa3.89□□□□□ -1.79
SSH4YKL124W QCR7P00128 127 aa3.89□□□□□ -1.79
SSH4YKL124W SPS100P13130 326 aa3.89□□□□□ -1.79
SSH4YKL124W TFS1P14306 219 aa3.89□□□□□ -1.79
SSH4YKL124W SPO7P18410 259 aa3.89□□□□□ -1.79
SSH4YKL124W PRE4P30657 266 aa3.89□□□□□ -1.79
SSH4YKL124W CYS4P32582 507 aaKnown RBP3.89□□□□□ -1.79
SSH4YKL124W SOF1P33750 489 aaKnown RBP3.89□□□□□ -1.79
SSH4YKL124W COS9P36034 407 aa3.89□□□□□ -1.79
SSH4YKL124W YBR242WP38331 238 aa3.89□□□□□ -1.79
SSH4YKL124W PRE6P40303 254 aaKnown RBP3.89□□□□□ -1.79
SSH4YKL124W HXT14P42833 540 aa3.89□□□□□ -1.79
SSH4YKL124W DPB11P47027 764 aaPredicted RBP3.89□□□□□ -1.79
SSH4YKL124W EXG2P52911 562 aa3.89□□□□□ -1.79
SSH4YKL124W YIP5P53108 310 aa3.89□□□□□ -1.79
SSH4YKL124W PET191Q02772 108 aa3.89□□□□□ -1.79
SSH4YKL124W HMS1Q12398 434 aa3.89□□□□□ -1.79
SSH4YKL124W PET20Q99373 253 aa3.89□□□□□ -1.79
SSH4YKL124W CDC39P25655 2108 aaKnown RBP3.88□□□□□ -1.79
SSH4YKL124W RPL11AP0C0W9 174 aaKnown RBP3.88□□□□□ -1.79
SSH4YKL124W PRP21P32524 280 aaPredicted RBP3.88□□□□□ -1.79
SSH4YKL124W MRPL6P32904 214 aa3.88□□□□□ -1.79
SSH4YKL124W PAD1P33751 242 aaKnown RBP RIP-Chip data3.88□□□□□ -1.79not detected
SSH4YKL124W PDX3P38075 228 aaKnown RBP3.88□□□□□ -1.79
SSH4YKL124W CTF8P38877 133 aa3.88□□□□□ -1.79
SSH4YKL124W ERG28P40030 148 aa3.88□□□□□ -1.79
SSH4YKL124W YIL165CP40446 119 aa3.88□□□□□ -1.79
SSH4YKL124W POG1P40473 351 aa3.88□□□□□ -1.79
SSH4YKL124W SLM1P40485 686 aa3.88□□□□□ -1.79
SSH4YKL124W YFL051CP43552 160 aa3.88□□□□□ -1.79
SSH4YKL124W FAR7P43592 221 aa3.88□□□□□ -1.79
SSH4YKL124W ADO1P47143 340 aaKnown RBP3.88□□□□□ -1.79
SSH4YKL124W YGR149WP48236 432 aa3.88□□□□□ -1.79
SSH4YKL124W PRM8P53174 237 aa3.88□□□□□ -1.79
SSH4YKL124W ORM1P53224 222 aa3.88□□□□□ -1.79
SSH4YKL124W STP4Q07351 490 aa3.88□□□□□ -1.79
SSH4YKL124W YPL225WQ08971 146 aaKnown RBP3.88□□□□□ -1.79
SSH4YKL124W THP3Q12049 470 aaKnown RBP3.88□□□□□ -1.79
SSH4YKL124W LYS21Q12122 440 aaKnown RBP3.88□□□□□ -1.79
SSH4YKL124W PAA1Q12447 191 aaKnown RBP3.88□□□□□ -1.79
SSH4YKL124W RPL11BQ3E757 174 aaPredicted RBP3.88□□□□□ -1.79
SSH4YKL124W YHR214C-EQ8TGK0 99 aa3.88□□□□□ -1.79
SSH4YKL124W URE2P23202 354 aaKnown RBP3.87□□□□□ -1.79
SSH4YKL124W EXG1P23776 448 aaKnown RBP3.87□□□□□ -1.79
SSH4YKL124W PRE2P30656 287 aaKnown RBP3.87□□□□□ -1.79
SSH4YKL124W RPC34P32910 317 aa3.87□□□□□ -1.79
SSH4YKL124W YPK3P38070 525 aa3.87□□□□□ -1.79
SSH4YKL124W YBR096WP38256 230 aa3.87□□□□□ -1.79
SSH4YKL124W ARN2P38724 620 aa3.87□□□□□ -1.79
SSH4YKL124W MSS4P38994 779 aa3.87□□□□□ -1.79
SSH4YKL124W STB1P42845 420 aa3.87□□□□□ -1.79
SSH4YKL124W PLP1Q04004 230 aa3.87□□□□□ -1.79
SSH4YKL124W FRE3Q08905 711 aa3.87□□□□□ -1.79
SSH4YKL124W UIP4Q08926 304 aa3.87□□□□□ -1.79
SSH4YKL124W SPC3Q12133 184 aa3.87□□□□□ -1.79
SSH4YKL124W PDA1P16387 420 aaKnown RBP3.87□□□□□ -1.79
SSH4YKL124W STE18P18852 110 aa3.87□□□□□ -1.79
SSH4YKL124W SAR1P20606 190 aaKnown RBP3.87□□□□□ -1.79
SSH4YKL124W RPL24BP24000 155 aaKnown RBP3.87□□□□□ -1.79
SSH4YKL124W CLB2P24869 491 aa3.87□□□□□ -1.79
SSH4YKL124W YPS1P32329 569 aa3.87□□□□□ -1.79
SSH4YKL124W MNS1P32906 549 aa3.87□□□□□ -1.79
SSH4YKL124W MRPS5P33759 307 aa3.87□□□□□ -1.79
SSH4YKL124W MIC12P38341 106 aa3.87□□□□□ -1.79
SSH4YKL124W MOB2P43563 287 aa3.87□□□□□ -1.79
SSH4YKL124W CTK2P46962 323 aa3.87□□□□□ -1.79
SSH4YKL124W IMO32P53219 342 aa3.87□□□□□ -1.79
SSH4YKL124W NQM1P53228 333 aaPredicted RBP3.87□□□□□ -1.79
SSH4YKL124W RCE1Q03530 315 aa3.87□□□□□ -1.79
SSH4YKL124W SSY1Q03770 852 aa3.87□□□□□ -1.79
SSH4YKL124W YMR130WQ04223 302 aa3.87□□□□□ -1.79
SSH4YKL124W HRT1Q08273 121 aa3.87□□□□□ -1.79
SSH4YKL124W SPO24Q3E752 67 aa3.87□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 51.3 ms