RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W RFC4P40339 323 aaKnown RBP0.94□□□□□ -2.26
CDC39YCR093W ERG25P53045 309 aa0.94□□□□□ -2.26
CDC39YCR093W BRR6P53062 197 aa0.94□□□□□ -2.26
CDC39YCR093W YNL095CP53932 642 aa0.94□□□□□ -2.26
CDC39YCR093W MRPS17Q03246 237 aaPredicted RBP0.94□□□□□ -2.26
CDC39YCR093W TRM82Q03774 444 aa0.94□□□□□ -2.26
CDC39YCR093W CDD1Q06549 142 aa0.94□□□□□ -2.26
CDC39YCR093W TOA2P32774 122 aa0.94□□□□□ -2.26
CDC39YCR093W MRPL27P36526 146 aaPredicted RBP0.94□□□□□ -2.26
CDC39YCR093W PRS2P38620 318 aaKnown RBP0.94□□□□□ -2.26
CDC39YCR093W PGA2P53903 129 aa0.94□□□□□ -2.26
CDC39YCR093W YNL040WP53960 456 aaPredicted RBP0.94□□□□□ -2.26
CDC39YCR093W INM2Q05533 292 aa0.94□□□□□ -2.26
CDC39YCR093W YHC1Q05900 231 aaKnown RBP0.94□□□□□ -2.26
CDC39YCR093W MFG1Q07684 458 aa0.94□□□□□ -2.26
CDC39YCR093W PAA1Q12447 191 aaKnown RBP0.94□□□□□ -2.26
CDC39YCR093W MHT1Q12525 324 aa0.94□□□□□ -2.26
CDC39YCR093W RPL28P02406 149 aaKnown RBP0.94□□□□□ -2.26
CDC39YCR093W CYC3P06182 269 aa0.94□□□□□ -2.26
CDC39YCR093W DAL5P15365 543 aa0.94□□□□□ -2.26
CDC39YCR093W ATS1P31386 333 aa0.94□□□□□ -2.26
CDC39YCR093W SPL2P38839 148 aa0.94□□□□□ -2.26
CDC39YCR093W PRE5P40302 234 aaKnown RBP0.94□□□□□ -2.26
CDC39YCR093W BNS1P50084 137 aa0.94□□□□□ -2.26
CDC39YCR093W RIB4P50861 169 aaPredicted RBP0.94□□□□□ -2.26
CDC39YCR093W FMP48P53233 369 aa0.94□□□□□ -2.26
CDC39YCR093W BOP2Q06150 570 aa0.94□□□□□ -2.26
CDC39YCR093W GAT3Q07928 141 aa0.94□□□□□ -2.26
CDC39YCR093W SYC1Q08553 188 aaPredicted RBP0.94□□□□□ -2.26
CDC39YCR093W DAP2P18962 818 aa0.94□□□□□ -2.26
CDC39YCR093W ISY1P21374 235 aaPredicted RBP0.94□□□□□ -2.26
CDC39YCR093W CHA1P25379 360 aaKnown RBP0.94□□□□□ -2.26
CDC39YCR093W PTM1P32857 523 aa0.94□□□□□ -2.26
CDC39YCR093W YHR127WP38833 243 aaKnown RBP0.94□□□□□ -2.26
CDC39YCR093W FIS1P40515 155 aa0.94□□□□□ -2.26
CDC39YCR093W GLG2P47011 380 aa0.94□□□□□ -2.26
CDC39YCR093W IRC18P47056 224 aa0.94□□□□□ -2.26
CDC39YCR093W GET1P53192 235 aa0.94□□□□□ -2.26
CDC39YCR093W MNT4P53745 580 aa0.94□□□□□ -2.26
CDC39YCR093W GIM3P53900 129 aa0.94□□□□□ -2.26
CDC39YCR093W YLR152CP54072 576 aa0.94□□□□□ -2.26
CDC39YCR093W SNT309Q06091 175 aaPredicted RBP0.94□□□□□ -2.26
CDC39YCR093W YOR283WQ12040 230 aaKnown RBP0.94□□□□□ -2.26
CDC39YCR093W GEA1P47102 1408 aaPredicted RBP0.94□□□□□ -2.26
CDC39YCR093W SFC1P33303 322 aa0.94□□□□□ -2.26
CDC39YCR093W UTH1P36135 365 aa0.94□□□□□ -2.26
CDC39YCR093W BAT1P38891 393 aaKnown RBP0.94□□□□□ -2.26
CDC39YCR093W JAC1P53193 184 aa0.94□□□□□ -2.26
CDC39YCR093W YGR026WP53217 278 aa0.94□□□□□ -2.26
CDC39YCR093W SUR7P54003 302 aa0.94□□□□□ -2.26
CDC39YCR093W FUS2Q05670 677 aa0.94□□□□□ -2.26
CDC39YCR093W STH1P32597 1359 aa0.93□□□□□ -2.26
CDC39YCR093W YOL163WP0CF20 169 aa0.93□□□□□ -2.26
CDC39YCR093W POT1P27796 417 aaKnown RBP RIP-Chip data0.93□□□□□ -2.26not detected
CDC39YCR093W SPT4P32914 102 aaPredicted RBP0.93□□□□□ -2.26
CDC39YCR093W VPS51P36116 164 aa0.93□□□□□ -2.26
CDC39YCR093W CAF4P36130 643 aa0.93□□□□□ -2.26
CDC39YCR093W AST2P39945 430 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W PEX31P53203 462 aa0.93□□□□□ -2.26
CDC39YCR093W SDO1Q07953 250 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W DBP3P20447 523 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W CKS1P20486 150 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W RPC11Q04307 110 aaPredicted RBP0.93□□□□□ -2.26
CDC39YCR093W YLR283WQ05867 314 aa0.93□□□□□ -2.26
CDC39YCR093W YPR195CQ06594 109 aa0.93□□□□□ -2.26
CDC39YCR093W DIB1Q06819 143 aaPredicted RBP0.93□□□□□ -2.26
CDC39YCR093W SGT2Q12118 346 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W RFM1Q12192 310 aa0.93□□□□□ -2.26
CDC39YCR093W YBL008W-AQ3E821 79 aa0.93□□□□□ -2.26
CDC39YCR093W SAS5Q99314 248 aa0.93□□□□□ -2.26
CDC39YCR093W FRS2P15625 503 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W YOX1P34161 385 aa0.93□□□□□ -2.26
CDC39YCR093W YKL162CP36052 402 aa0.93□□□□□ -2.26
CDC39YCR093W YHR177WP38867 453 aa0.93□□□□□ -2.26
CDC39YCR093W YAR068WP39564 161 aa0.93□□□□□ -2.26
CDC39YCR093W RMD6P39975 231 aa0.93□□□□□ -2.26
CDC39YCR093W SYS1P41544 203 aa0.93□□□□□ -2.26
CDC39YCR093W JHD2P47156 728 aaPredicted RBP0.93□□□□□ -2.26
CDC39YCR093W HSH155P49955 971 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W PRO2P54885 456 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W RRT8Q08219 342 aa0.93□□□□□ -2.26
CDC39YCR093W RPL25P04456 142 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W RPS8AP0CX39 200 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W RPS8BP0CX40 200 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W DBP7P36120 742 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W PTI1P39927 425 aaPredicted RBP0.93□□□□□ -2.26
CDC39YCR093W YFR045WP43617 309 aa0.93□□□□□ -2.26
CDC39YCR093W YGR219WP53307 113 aa0.93□□□□□ -2.26
CDC39YCR093W SAC3P46674 1301 aa0.93□□□□□ -2.26
CDC39YCR093W ADH2P00331 348 aaKnown RBP0.93□□□□□ -2.26
CDC39YCR093W YKR104WP0CE69 306 aa0.93□□□□□ -2.26
CDC39YCR093W SIM1P40472 476 aa0.93□□□□□ -2.26
CDC39YCR093W YJL118WP47022 219 aa0.93□□□□□ -2.26
CDC39YCR093W YML096WQ04489 525 aa0.93□□□□□ -2.26
CDC39YCR093W YDR222WQ04925 415 aa0.93□□□□□ -2.26
CDC39YCR093W NEJ1Q06148 342 aa0.93□□□□□ -2.26
CDC39YCR093W YLR036CQ07986 203 aa0.93□□□□□ -2.26
CDC39YCR093W TLG2Q08144 397 aa0.93□□□□□ -2.26
CDC39YCR093W FDH1Q08911 376 aa0.93□□□□□ -2.26
CDC39YCR093W RAX2Q12465 1220 aa0.93□□□□□ -2.26
Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms