RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 CASTOR2A6NHX0 329 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 MYMKA6NI61 221 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 F8W810 466 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 HNRNPDLO14979 420 aaKnown RBP17.73■□□□□ 0.43
TRIM28-206ENST00000595974 HARSP12081 509 aaKnown RBP17.73■□□□□ 0.43
TRIM28-206ENST00000595974 GAP43P17677 238 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 GLUD2P49448 558 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 LIG4P49917 911 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 OSTNP61366 133 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 RBM10P98175 930 aaKnown RBP17.73■□□□□ 0.43
TRIM28-206ENST00000595974 GTF2BQ00403 316 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 BECN1Q14457 450 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 SMAD2Q15796 467 aaKnown RBP17.73■□□□□ 0.43
TRIM28-206ENST00000595974 XKR4Q5GH76 650 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 GLRA4Q5JXX5 417 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 LLGL2Q6P1M3 1020 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 PPFIBP1Q86W92 1011 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 MAP4K3Q8IVH8 894 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 PDILTQ8N807 584 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 HVCN1Q96D96 273 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 DNAJC19Q96DA6 116 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 ZBTB45Q96K62 511 aaPredicted RBP17.73■□□□□ 0.43
TRIM28-206ENST00000595974 SNX27Q96L92 541 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 ACAP3Q96P50 834 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 EMILIN2Q9BXX0 1053 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 CXCL16Q9H2A7 254 aa17.73■□□□□ 0.43
TRIM28-206ENST00000595974 SF3B1O75533 1304 aaKnown RBP eCLIP17.72■□□□□ 0.432e-6■■■■■ 29.9
TRIM28-206ENST00000595974 ANK1P16157 1881 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 HOXB8P17481 243 aaPredicted RBP17.72■□□□□ 0.43
TRIM28-206ENST00000595974 MATR3P43243 847 aaKnown RBP eCLIP17.72■□□□□ 0.43
TRIM28-206ENST00000595974 DNM1Q05193 864 aaKnown RBP17.72■□□□□ 0.43
TRIM28-206ENST00000595974 E2F4Q16254 413 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 KYAT1Q16773 422 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 AXDND1Q5T1B0 1012 aaPredicted RBP17.72■□□□□ 0.43
TRIM28-206ENST00000595974 ANKRD54Q6NXT1 300 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 SHC4Q6S5L8 630 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 ALKAL1Q6UXT8 129 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 SFR1Q86XK3 245 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 GPR65Q8IYL9 337 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 UROC1Q96N76 676 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 PAAF1Q9BRP4 392 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 PANK2Q9BZ23 570 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 TNMDQ9H2S6 317 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 SLC38A7Q9NVC3 462 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 DZANK1Q9NVP4 752 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 CNTN3Q9P232 1028 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 CACNG4Q9UBN1 327 aa17.72■□□□□ 0.43
TRIM28-206ENST00000595974 SMIM28A0A1B0GU29 152 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 TMEM189-UBE2V1I3L0A0 370 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 LILRB3O75022 631 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 TADA2AO75478 443 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 KIF4AO95239 1232 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 KCNE1P15382 129 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 NMT1P30419 496 aaKnown RBP17.71■□□□□ 0.43
TRIM28-206ENST00000595974 ME1P48163 572 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 DSG1Q02413 1049 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 USP41Q3LFD5 358 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 TPRNQ4KMQ1 711 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 KIAA1841Q6NSI8 718 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 GPR62Q9BZJ7 368 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 LRRC27Q9C0I9 530 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 OLFML3Q9NRN5 406 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 CHST7Q9NS84 486 aa17.71■□□□□ 0.43
TRIM28-206ENST00000595974 USP15Q9Y4E8 981 aaPredicted RBP17.71■□□□□ 0.43
TRIM28-206ENST00000595974 FRMD3A2A2Y4 597 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 C2CD2LO14523 706 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 CLTAP09496 248 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 CNPP09543 421 aaKnown RBP17.7■□□□□ 0.42
TRIM28-206ENST00000595974 CREMQ03060 361 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 ZP2Q05996 745 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 ELAVL2Q12926 359 aaKnown RBP17.7■□□□□ 0.42
TRIM28-206ENST00000595974 KIAA0319Q5VV43 1072 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 TAS1R1Q7RTX1 841 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 ZNF720Q7Z2F6 126 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 ADHFE1Q8IWW8 467 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 IQUBQ8NA54 791 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 SLC22A17Q8WUG5 538 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 RABGGTAQ92696 567 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 KLHL5Q96PQ7 755 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 POP1Q99575 1024 aaKnown RBP17.7■□□□□ 0.42
TRIM28-206ENST00000595974 HAPLN2Q9GZV7 340 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 MAGEF1Q9HAY2 307 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.7■□□□□ 0.428e-8■□□□□ 8.8
TRIM28-206ENST00000595974 KBTBD4Q9NVX7 518 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 RCOR1Q9UKL0 485 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 PCDHA7Q9UN72 937 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 ZDHHC9Q9Y397 364 aa17.7■□□□□ 0.42
TRIM28-206ENST00000595974 OGTO15294 1046 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 PPP1R37O75864 691 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 ADH1AP07327 375 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 IDEP14735 1019 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 KLRC2P26717 231 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 KRT85P78386 507 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 ALCAMQ13740 583 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 ZC2HC1CQ53FD0 456 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-206ENST00000595974 RESP18Q5W5W9 173 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 SYCE2Q6PIF2 218 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 HASPINQ8TF76 798 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 SUSD6Q92537 303 aa17.69■□□□□ 0.42
TRIM28-206ENST00000595974 DHX58Q96C10 678 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms