RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 KCNC3Q14003 757 aa22.01■■□□□ 1.11
SS18-218ENST00000581021 SMC1AQ14683 1233 aaKnown RBP22.01■■□□□ 1.11
SS18-218ENST00000581021 PDE12Q6L8Q7 609 aaKnown RBP22.01■■□□□ 1.11
SS18-218ENST00000581021 APBB1IPQ7Z5R6 666 aaPredicted RBP22.01■■□□□ 1.11
SS18-218ENST00000581021 GRAMD1CQ8IYS0 662 aa22.01■■□□□ 1.11
SS18-218ENST00000581021 TMEM130Q8N3G9 435 aa22.01■■□□□ 1.11
SS18-218ENST00000581021 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.01■■□□□ 1.11
SS18-218ENST00000581021 CCDC94Q9BW85 323 aaPredicted RBP22.01■■□□□ 1.11
SS18-218ENST00000581021 OLFML3Q9NRN5 406 aa22.01■■□□□ 1.11
SS18-218ENST00000581021 PANK4Q9NVE7 773 aa22.01■■□□□ 1.11
SS18-218ENST00000581021 SEL1LQ9UBV2 794 aa22.01■■□□□ 1.11
SS18-218ENST00000581021 KCNH3Q9ULD8 1083 aa22.01■■□□□ 1.11
SS18-218ENST00000581021 HPSEQ9Y251 543 aa22.01■■□□□ 1.11
SS18-218ENST00000581021 TRIP11Q15643 1979 aa22.01■■□□□ 1.11
SS18-218ENST00000581021 SMIM28A0A1B0GU29 152 aa22■■□□□ 1.11
SS18-218ENST00000581021 A0A1B0GVL5 298 aa22■■□□□ 1.11
SS18-218ENST00000581021 CLDN3O15551 220 aa22■■□□□ 1.11
SS18-218ENST00000581021 ACTN4O43707 911 aaKnown RBP22■■□□□ 1.11
SS18-218ENST00000581021 KIF4AO95239 1232 aa22■■□□□ 1.11
SS18-218ENST00000581021 THP07101 528 aa22■■□□□ 1.11
SS18-218ENST00000581021 CTSAP10619 480 aa22■■□□□ 1.11
SS18-218ENST00000581021 SCP2P22307 547 aa22■■□□□ 1.11
SS18-218ENST00000581021 TNFSF9P41273 254 aa22■■□□□ 1.11
SS18-218ENST00000581021 COASYQ13057 564 aa22■■□□□ 1.11
SS18-218ENST00000581021 PTPN14Q15678 1187 aa22■■□□□ 1.11
SS18-218ENST00000581021 SLC10A6Q3KNW5 377 aa22■■□□□ 1.11
SS18-218ENST00000581021 LEXMQ3ZCV2 418 aa22■■□□□ 1.11
SS18-218ENST00000581021 HERC4Q5GLZ8 1057 aaPredicted RBP22■■□□□ 1.11
SS18-218ENST00000581021 ADALQ6DHV7 355 aa22■■□□□ 1.11
SS18-218ENST00000581021 EP400NLQ6ZTU2 488 aa22■■□□□ 1.11
SS18-218ENST00000581021 B3GALT6Q96L58 329 aa22■■□□□ 1.11
SS18-218ENST00000581021 ACAP3Q96P50 834 aa22■■□□□ 1.11
SS18-218ENST00000581021 MRPL44Q9H9J2 332 aaKnown RBP22■■□□□ 1.11
SS18-218ENST00000581021 GOLGA2P5Q9HBQ8 144 aa22■■□□□ 1.11
SS18-218ENST00000581021 FAM13BQ9NYF5 915 aa22■■□□□ 1.11
SS18-218ENST00000581021 BARX2Q9UMQ3 279 aaPredicted RBP22■■□□□ 1.11
SS18-218ENST00000581021 A0A0B4J269 797 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 CARNS1A5YM72 827 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 LILRB3O75022 631 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 CXCL8P10145 99 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 CMA1P23946 247 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 HSP90AA2PQ14568 343 aaPredicted RBP21.99■■□□□ 1.11
SS18-218ENST00000581021 CLUL1Q15846 466 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 CNNM4Q6P4Q7 775 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 HASPINQ8TF76 798 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 NECAB3Q96P71 396 aaPredicted RBP21.99■■□□□ 1.11
SS18-218ENST00000581021 HERC2P3Q9BVR0 1158 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 GPR62Q9BZJ7 368 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 BLZF1Q9H2G9 400 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 CNTN3Q9P232 1028 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 SERTAD1Q9UHV2 236 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 ATP6V1DQ9Y5K8 247 aa21.99■■□□□ 1.11
SS18-218ENST00000581021 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.98■■□□□ 1.11
SS18-218ENST00000581021 NCK2O43639 380 aa21.98■■□□□ 1.11
SS18-218ENST00000581021 CXCL14O95715 111 aa21.98■■□□□ 1.11
SS18-218ENST00000581021 KCNE1P15382 129 aa21.98■■□□□ 1.11
SS18-218ENST00000581021 CD300LGQ6UXG3 332 aa21.98■■□□□ 1.11
SS18-218ENST00000581021 C3orf58Q8NDZ4 430 aa21.98■■□□□ 1.11
SS18-218ENST00000581021 PPP2R3CQ969Q6 453 aa21.98■■□□□ 1.11
SS18-218ENST00000581021 C18orf25Q96B23 403 aaPredicted RBP21.98■■□□□ 1.11
SS18-218ENST00000581021 MSLNLQ96KJ4 702 aa21.98■■□□□ 1.11
SS18-218ENST00000581021 C7orf25Q9BPX7 421 aa21.98■■□□□ 1.11
SS18-218ENST00000581021 GOLPH3LQ9H4A5 285 aa21.98■■□□□ 1.11
SS18-218ENST00000581021 TOPORSQ9NS56 1045 aaPredicted RBP21.98■■□□□ 1.11
SS18-218ENST00000581021 IRAK3Q9Y616 596 aa21.98■■□□□ 1.11
SS18-218ENST00000581021 C5orf42Q9H799 3197 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.97■■□□□ 1.11
SS18-218ENST00000581021 FAM237AA0A1B0GTK4 181 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 CLASP2O75122 1294 aaKnown RBP21.97■■□□□ 1.11
SS18-218ENST00000581021 GCNT3O95395 438 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 SOD2P04179 222 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 ADSSP30520 456 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 MATR3P43243 847 aaKnown RBP eCLIP21.97■■□□□ 1.11
SS18-218ENST00000581021 YARSP54577 528 aaKnown RBP21.97■■□□□ 1.11
SS18-218ENST00000581021 ASIC1P78348 528 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 NUCB2P80303 420 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 EHHADHQ08426 723 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 CUL4BQ13620 913 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 ENOX2Q16206 610 aaKnown RBP21.97■■□□□ 1.11
SS18-218ENST00000581021 AAK1Q2M2I8 961 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 L1TD1Q5T7N2 865 aaKnown RBP21.97■■□□□ 1.11
SS18-218ENST00000581021 FUT10Q6P4F1 479 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 ADAMTS19Q8TE59 1207 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 HVCN1Q96D96 273 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 MSTO1Q9BUK6 570 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 COLEC11Q9BWP8 271 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 SCAND2PQ9GZW5 306 aaPredicted RBP21.97■■□□□ 1.11
SS18-218ENST00000581021 MAGEF1Q9HAY2 307 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 ADAM28Q9UKQ2 775 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 STYXL1Q9Y6J8 313 aa21.97■■□□□ 1.11
SS18-218ENST00000581021 TCF20Q9UGU0 1960 aaKnown RBP21.97■■□□□ 1.11
SS18-218ENST00000581021 CITO14578 2027 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 CLTAP09496 248 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 IL9P15248 144 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 HOXD13P35453 343 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 AFMP43652 599 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 NDUFV1P49821 464 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 CLCNKBP51801 687 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 NDUFA8P51970 172 aa21.96■■□□□ 1.11
SS18-218ENST00000581021 SPAG1Q07617 926 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms