RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SMIM28A0A1B0GU29 152 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 PVALEFA0A1B0GWK0 134 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 TTC26A0AVF1 554 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 GOLGA8IPA6NC78 632 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 CASTOR2A6NHX0 329 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 GOLGA8JA6NMD2 632 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 HIDE1A8MVS5 230 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 LACTBL1A8MY62 500 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 LINC01565O15544 149 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 HOXA2O43364 376 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 RPN1P04843 607 aaKnown RBP10.08□□□□□ -0.8
VPS35-206ENST00000565228 RB1P06400 928 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 BMP6P22004 513 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 ACOT2P49753 483 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 PLCB3Q01970 1234 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 DLX2Q07687 328 aaPredicted RBP10.08□□□□□ -0.8
VPS35-206ENST00000565228 NOLC1Q14978 699 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS35-206ENST00000565228 ZBTB6Q15916 424 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 DCAF4L1Q3SXM0 396 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 TCEAL5Q5H9L2 206 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 FAM26FQ5R3K3 315 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 NELFCDQ8IXH7 590 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 CCDC65Q8IXS2 484 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 SMYD4Q8IYR2 804 aaPredicted RBP10.08□□□□□ -0.8
VPS35-206ENST00000565228 MICALL1Q8N3F8 863 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 CNNM3Q8NE01 707 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 MAFAQ8NHW3 353 aaPredicted RBP10.08□□□□□ -0.8
VPS35-206ENST00000565228 PLEKHO2Q8TD55 490 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 SAAL1Q96ER3 474 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 IGSF21Q96ID5 467 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 SAMD11Q96NU1 681 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 PLVAPQ9BX97 442 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 GPR62Q9BZJ7 368 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 TRIM6Q9C030 488 aaPredicted RBP10.08□□□□□ -0.8
VPS35-206ENST00000565228 PCIF1Q9H4Z3 704 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 MAGEF1Q9HAY2 307 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 LMBRD1Q9NUN5 540 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 TUBGCP4Q9UGJ1 667 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 CPSF3Q9UKF6 684 aaKnown RBP10.08□□□□□ -0.8
VPS35-206ENST00000565228 PRG3Q9Y2Y8 225 aaPredicted RBP10.08□□□□□ -0.8
VPS35-206ENST00000565228 PLXNA3P51805 1871 aa10.08□□□□□ -0.8
VPS35-206ENST00000565228 PTPRJQ12913 1337 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 HNRNPDLO14979 420 aaKnown RBP10.07□□□□□ -0.8
VPS35-206ENST00000565228 LILRB3O75022 631 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 KIF4AO95239 1232 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 GLP2RO95838 553 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 NFICP08651 508 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 LAG3P18627 525 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 LTBRP36941 435 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 LIG4P49917 911 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 HYAL1Q12794 435 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 STRN3Q13033 797 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 BMT2Q1RMZ1 405 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 TMEM132AQ24JP5 1023 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 SPOUT1Q5T280 376 aaKnown RBP10.07□□□□□ -0.8
VPS35-206ENST00000565228 EFCAB13Q8IY85 973 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 CEP57L1Q8IYX8 460 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 ABI1Q8IZP0 508 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 PIP4P2Q8N4L2 257 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 CXorf38Q8TB03 319 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 SPATA20Q8TB22 786 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 HASPINQ8TF76 798 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 MRPL38Q96DV4 380 aaKnown RBP10.07□□□□□ -0.8
VPS35-206ENST00000565228 ZNF558Q96NG5 402 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 ZBP1Q9H171 429 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 KCTD10Q9H3F6 313 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 CNTN3Q9P232 1028 aa10.07□□□□□ -0.8
VPS35-206ENST00000565228 TCF20Q9UGU0 1960 aaKnown RBP10.06□□□□□ -0.8
VPS35-206ENST00000565228 I3L4J1 428 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 PER2O15055 1255 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 CLIC2O15247 247 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 OGTO15294 1046 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 CLDN3O15551 220 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 PRPF40AO75400 957 aaKnown RBP10.06□□□□□ -0.8
VPS35-206ENST00000565228 RHOBTB3O94955 611 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 KCNE1P15382 129 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 CD44P16070 742 aaKnown RBP10.06□□□□□ -0.8
VPS35-206ENST00000565228 OR1G1P47890 313 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 CLCNKBP51801 687 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 FAM160A1Q05DH4 1040 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 NCBP1Q09161 790 aaKnown RBP10.06□□□□□ -0.8
VPS35-206ENST00000565228 GRIK3Q13003 919 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 KCNC3Q14003 757 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 COL19A1Q14993 1142 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 POSTNQ15063 836 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 CBWD2Q8IUF1 395 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 HVCN1Q96D96 273 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 BICD1Q96G01 975 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 ACAP3Q96P50 834 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 ACCSQ96QU6 501 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 GAS2L1Q99501 681 aaPredicted RBP10.06□□□□□ -0.8
VPS35-206ENST00000565228 ADPGKQ9BRR6 497 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 TCHPQ9BT92 498 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 C11orf84Q9BUA3 381 aaPredicted RBP10.06□□□□□ -0.8
VPS35-206ENST00000565228 MSTO1Q9BUK6 570 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 MRPL9Q9BYD2 267 aaKnown RBP10.06□□□□□ -0.8
VPS35-206ENST00000565228 AGPAT3Q9NRZ7 376 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 SPG21Q9NZD8 308 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 USP25Q9UHP3 1055 aa10.06□□□□□ -0.8
VPS35-206ENST00000565228 MAPK8IP1Q9UQF2 711 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms