RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 TUBB8Q3ZCM7 444 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 HSP90AB4PQ58FF6 505 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 DGKKQ5KSL6 1271 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 PRAMEF14Q5SWL7 426 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 CIAPIN1Q6FI81 312 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 APBB1IPQ7Z5R6 666 aaPredicted RBP9.03□□□□□ -0.96
NUP54-215ENST00000514313 MYLK4Q86YV6 388 aaPredicted RBP9.03□□□□□ -0.96
NUP54-215ENST00000514313 MYRIPQ8NFW9 859 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 BRIX1Q8TDN6 353 aaKnown RBP9.03□□□□□ -0.96
NUP54-215ENST00000514313 FNIP1Q8TF40 1166 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 STON2Q8WXE9 905 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 PPM1EQ8WY54 764 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 GCDHQ92947 438 aaPredicted RBP9.03□□□□□ -0.96
NUP54-215ENST00000514313 MRGPRX1Q96LB2 322 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 WDR12Q9GZL7 423 aaKnown RBP9.03□□□□□ -0.96
NUP54-215ENST00000514313 ZNF287Q9HBT7 754 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 ARFGAP3Q9NP61 516 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 SARS2Q9NP81 518 aaKnown RBP9.03□□□□□ -0.96
NUP54-215ENST00000514313 CDC23Q9UJX2 597 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 ACTL7AQ9Y615 435 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 F2RL2O00254 374 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 DDX3XO00571 662 aaKnown RBP eCLIP9.02□□□□□ -0.97
NUP54-215ENST00000514313 TOX4O94842 621 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 GASTP01350 101 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 FTH1P19P0C7X4 201 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 ZNF888P0CJ79 500 aaPredicted RBP9.02□□□□□ -0.97
NUP54-215ENST00000514313 GYPEP15421 78 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 RPL13P26373 211 aaKnown RBP9.02□□□□□ -0.97
NUP54-215ENST00000514313 PRDX5P30044 214 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 CTXN1P60606 82 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 FMO1Q01740 532 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 TRIM14Q14142 442 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 CNGA2Q16280 664 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 MLANAQ16655 118 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 FAM209BQ5JX69 171 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 IZUMO3Q5VZ72 239 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 Q6ZUG5 572 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 SYDE1Q6ZW31 735 aaPredicted RBP9.02□□□□□ -0.97
NUP54-215ENST00000514313 SESTD1Q86VW0 696 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 FAM90A1Q86YD7 464 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 REXO1L1PQ8IX06 675 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 CASKIN2Q8WXE0 1202 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 SLC7A6OSQ96CW6 309 aaPredicted RBP9.02□□□□□ -0.97
NUP54-215ENST00000514313 YTHDC1Q96MU7 727 aaKnown RBP9.02□□□□□ -0.97
NUP54-215ENST00000514313 HERPUD2Q9BSE4 406 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 ZFP64Q9NPA5 681 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 STARD7Q9NQZ5 370 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 CNNM1Q9NRU3 951 aa9.02□□□□□ -0.97
NUP54-215ENST00000514313 RUVBL1Q9Y265 456 aaKnown RBP9.02□□□□□ -0.97
NUP54-215ENST00000514313 ISM1B1AKI9 464 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 F8W8V4 182 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 FOXN3O00409 490 aaPredicted RBP9.01□□□□□ -0.97
NUP54-215ENST00000514313 MTSS1O43312 755 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 AHSGP02765 367 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 CD1AP06126 327 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 PTPN7P35236 360 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 PPM1AP35813 382 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 DLG4P78352 724 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 DUSP2Q05923 314 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 DLX2Q07687 328 aaPredicted RBP9.01□□□□□ -0.97
NUP54-215ENST00000514313 KHDC1LQ5JSQ8 128 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 AGBL4Q5VU57 503 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 GPR155Q7Z3F1 870 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 MDM1Q8TC05 714 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 AJUBAQ96IF1 538 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 SPATA25Q9BR10 227 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 C1orf43Q9BWL3 253 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 MRPL46Q9H2W6 279 aaKnown RBP9.01□□□□□ -0.97
NUP54-215ENST00000514313 PNPLA8Q9NP80 782 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 STK32BQ9NY57 414 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 CPNE7Q9UBL6 633 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 LRCH1Q9Y2L9 728 aa9.01□□□□□ -0.97
NUP54-215ENST00000514313 MORC2Q9Y6X9 1032 aaPredicted RBP9.01□□□□□ -0.97
NUP54-215ENST00000514313 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.01□□□□□ -0.97
NUP54-215ENST00000514313 PPFIA4O75335 1185 aa9□□□□□ -0.97
NUP54-215ENST00000514313 JUNBP17275 347 aaPredicted RBP9□□□□□ -0.97
NUP54-215ENST00000514313 ALDH1A3P47895 512 aa9□□□□□ -0.97
NUP54-215ENST00000514313 SUMO3P55854 103 aaPredicted RBP9□□□□□ -0.97
NUP54-215ENST00000514313 DAG1Q14118 895 aa9□□□□□ -0.97
NUP54-215ENST00000514313 ACAP1Q15027 740 aa9□□□□□ -0.97
NUP54-215ENST00000514313 ZNF572Q7Z3I7 529 aaPredicted RBP9□□□□□ -0.97
NUP54-215ENST00000514313 LPPQ93052 612 aa9□□□□□ -0.97
NUP54-215ENST00000514313 CARD11Q9BXL7 1154 aa9□□□□□ -0.97
NUP54-215ENST00000514313 UNKQ9C0B0 810 aaKnown RBP9□□□□□ -0.97
NUP54-215ENST00000514313 OR10A2Q9H208 303 aa9□□□□□ -0.97
NUP54-215ENST00000514313 PIH1D1Q9NWS0 290 aaKnown RBP9□□□□□ -0.97
NUP54-215ENST00000514313 FAM53CQ9NYF3 392 aa9□□□□□ -0.97
NUP54-215ENST00000514313 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9□□□□□ -0.97
NUP54-215ENST00000514313 PADI4Q9UM07 663 aa9□□□□□ -0.97
NUP54-215ENST00000514313 LRRC10BA6NIK2 292 aa8.99□□□□□ -0.97
NUP54-215ENST00000514313 FGAP02671 866 aa8.99□□□□□ -0.97
NUP54-215ENST00000514313 TYRP1P17643 537 aa8.99□□□□□ -0.97
NUP54-215ENST00000514313 EN2P19622 333 aaPredicted RBP8.99□□□□□ -0.97
NUP54-215ENST00000514313 CSF2RBP32927 897 aa8.99□□□□□ -0.97
NUP54-215ENST00000514313 BPIFB4P59827 614 aa8.99□□□□□ -0.97
NUP54-215ENST00000514313 TNFAIP2Q03169 654 aa8.99□□□□□ -0.97
NUP54-215ENST00000514313 PMS2P11Q13670 270 aa8.99□□□□□ -0.97
NUP54-215ENST00000514313 CCDC33Q8N5R6 958 aa8.99□□□□□ -0.97
NUP54-215ENST00000514313 RNF152Q8N8N0 203 aa8.99□□□□□ -0.97
NUP54-215ENST00000514313 SIGLEC10Q96LC7 697 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms