RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 TADA2AO75478 443 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 FAM13AO94988 1023 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 GLUD1P00367 558 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 KRT18P05783 430 aaKnown RBP11.15□□□□□ -0.62
SF3A3-204ENST00000462258 WEE2P0C1S8 567 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 MCF2P10911 925 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 COL9A1P20849 921 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 SP100P23497 879 aaPredicted RBP11.15□□□□□ -0.62
SF3A3-204ENST00000462258 MARCKSP29966 332 aaPredicted RBP11.15□□□□□ -0.62
SF3A3-204ENST00000462258 TXLNAP40222 546 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 MTHFRP42898 656 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 YARSP54577 528 aaKnown RBP11.15□□□□□ -0.62
SF3A3-204ENST00000462258 OSTNP61366 133 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 CEBPZQ03701 1054 aaKnown RBP11.15□□□□□ -0.62
SF3A3-204ENST00000462258 MCM6Q14566 821 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 NOLC1Q14978 699 aaKnown RBP eCLIP11.15□□□□□ -0.62
SF3A3-204ENST00000462258 USP41Q3LFD5 358 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 ARSHQ5FYA8 562 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 HERC4Q5GLZ8 1057 aaPredicted RBP11.15□□□□□ -0.62
SF3A3-204ENST00000462258 KIAA0319Q5VV43 1072 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 C12orf76Q8N812 135 aaPredicted RBP11.15□□□□□ -0.62
SF3A3-204ENST00000462258 RIN2Q8WYP3 895 aaPredicted RBP11.15□□□□□ -0.62
SF3A3-204ENST00000462258 SNX21Q969T3 373 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 SNX27Q96L92 541 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 RIPOR3Q96MK2 946 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 PPP1R10Q96QC0 940 aaKnown RBP11.15□□□□□ -0.62
SF3A3-204ENST00000462258 NTPCRQ9BSD7 190 aaKnown RBP11.15□□□□□ -0.62
SF3A3-204ENST00000462258 TCHPQ9BT92 498 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 LRFN3Q9BTN0 628 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 CCSER1Q9C0I3 900 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 PARVGQ9HBI0 331 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 RXFP1Q9HBX9 757 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 MAN1C1Q9NR34 630 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 TSHZ2Q9NRE2 1034 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.15□□□□□ -0.62
SF3A3-204ENST00000462258 CHST7Q9NS84 486 aa11.15□□□□□ -0.62
SF3A3-204ENST00000462258 GPR37L1O60883 481 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 TOM1L1O75674 476 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 BRD1O95696 1058 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 ZNF131P52739 623 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 CREMQ03060 361 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 SPECC1Q5M775 1068 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 RTP2Q5QGT7 225 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 ELMSAN1Q6PJG2 1045 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 TMC5Q6UXY8 1006 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 ZPBP2Q6X784 338 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 BICD1Q96G01 975 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 EPSTI1Q96J88 318 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 UROC1Q96N76 676 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 USP28Q96RU2 1077 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 ZSCAN16Q9H4T2 348 aaPredicted RBP11.14□□□□□ -0.63
SF3A3-204ENST00000462258 GOLGA2P5Q9HBQ8 144 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 CCDC39Q9UFE4 941 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 NR2E1Q9Y466 385 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 SRPRBQ9Y5M8 271 aaKnown RBP11.14□□□□□ -0.63
SF3A3-204ENST00000462258 ANK1P16157 1881 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 TRIOO75962 3097 aa11.14□□□□□ -0.63
SF3A3-204ENST00000462258 PRR33A8MZF0 331 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 TMEM189-UBE2V1I3L0A0 370 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 HNRNPDLO14979 420 aaKnown RBP11.13□□□□□ -0.63
SF3A3-204ENST00000462258 CLCNKBP51801 687 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 ELAVL2Q12926 359 aaKnown RBP11.13□□□□□ -0.63
SF3A3-204ENST00000462258 PSMD5Q16401 504 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 FAM171A1Q5VUB5 890 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 KANK3Q6NY19 840 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 PRSS55Q6UWB4 352 aaPredicted RBP11.13□□□□□ -0.63
SF3A3-204ENST00000462258 USP49Q70CQ1 688 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 HAUS6Q7Z4H7 955 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 GLYCTKQ8IVS8 523 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 GPR65Q8IYL9 337 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 MYCT1Q8N699 235 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 TDRD5Q8NAT2 981 aaKnown RBP11.13□□□□□ -0.63
SF3A3-204ENST00000462258 FEZF2Q8TBJ5 459 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 KCNN1Q92952 543 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 ZBTB45Q96K62 511 aaPredicted RBP11.13□□□□□ -0.63
SF3A3-204ENST00000462258 CLIC6Q96NY7 704 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 ACAP3Q96P50 834 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 TTPALQ9BTX7 342 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 ZHX3Q9H4I2 956 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 SLC38A7Q9NVC3 462 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 CNTN3Q9P232 1028 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 FNIP2Q9P278 1114 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 STK17AQ9UEE5 414 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 DPP7Q9UHL4 492 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 MORC2Q9Y6X9 1032 aaPredicted RBP11.13□□□□□ -0.63
SF3A3-204ENST00000462258 TSC2P49815 1807 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 TECTAO75443 2155 aa11.13□□□□□ -0.63
SF3A3-204ENST00000462258 SMIM28A0A1B0GU29 152 aa11.12□□□□□ -0.63
SF3A3-204ENST00000462258 C2CD4DB7Z1M9 353 aa11.12□□□□□ -0.63
SF3A3-204ENST00000462258 CLDN3O15551 220 aa11.12□□□□□ -0.63
SF3A3-204ENST00000462258 TRAK2O60296 914 aa11.12□□□□□ -0.63
SF3A3-204ENST00000462258 B3GAT3O94766 335 aa11.12□□□□□ -0.63
SF3A3-204ENST00000462258 HSP90AA1P07900 732 aaKnown RBP11.12□□□□□ -0.63
SF3A3-204ENST00000462258 RPL17P18621 184 aaKnown RBP11.12□□□□□ -0.63
SF3A3-204ENST00000462258 SCP2P22307 547 aa11.12□□□□□ -0.63
SF3A3-204ENST00000462258 MATR3P43243 847 aaKnown RBP eCLIP11.12□□□□□ -0.63
SF3A3-204ENST00000462258 NASPP49321 788 aaPredicted RBP11.12□□□□□ -0.63
SF3A3-204ENST00000462258 LIG4P49917 911 aa11.12□□□□□ -0.63
SF3A3-204ENST00000462258 SOX4Q06945 474 aaPredicted RBP11.12□□□□□ -0.63
SF3A3-204ENST00000462258 MCL1Q07820 350 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms