RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 NCK2O43639 380 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 RASGRP1O95267 797 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 FAM200BP0CF97 657 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 MRPS6P82932 125 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 APOA5Q6Q788 366 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 TMEM270Q6UE05 265 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 CHMP1BQ7LBR1 199 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 SDCCAG8Q86SQ7 713 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 KIF18AQ8NI77 898 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 PPP1R16AQ96I34 528 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 PGLYRP2Q96PD5 576 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 TGS1Q96RS0 853 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 FANCEQ9HB96 536 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 KCNQ5Q9NR82 932 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 ASNSD1Q9NWL6 643 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 VPS28Q9UK41 221 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 DYNC1I1O14576 645 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 IGSF3O75054 1194 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 ATG13O75143 517 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 RASSF9O75901 435 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 TBXAS1P24557 533 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 VCPP55072 806 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 USP4Q13107 963 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 TRIM14Q14142 442 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 GIT2Q14161 759 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 DACT2Q5SW24 774 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 ANKRD40Q6AI12 368 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 XXYLT1Q8NBI6 393 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 EIF2AK1Q9BQI3 630 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 UNC93B1Q9H1C4 597 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 CAPN10Q9HC96 672 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 PDZK1P1A8MUH7 402 aa9.77□□□□□ -0.84
LIMCH1-202ENST00000381753 CYB561D2O14569 222 aa9.77□□□□□ -0.84
LIMCH1-202ENST00000381753 POLR2FP61218 127 aaKnown RBP9.77□□□□□ -0.84
LIMCH1-202ENST00000381753 SRSF11Q05519 484 aaKnown RBP9.77□□□□□ -0.84
LIMCH1-202ENST00000381753 ZNF284Q2VY69 593 aa9.77□□□□□ -0.84
LIMCH1-202ENST00000381753 METTL7BQ6UX53 244 aa9.77□□□□□ -0.84
LIMCH1-202ENST00000381753 FBXO33Q7Z6M2 555 aa9.77□□□□□ -0.84
LIMCH1-202ENST00000381753 MFN1Q8IWA4 741 aa9.77□□□□□ -0.84
LIMCH1-202ENST00000381753 ULK4Q96C45 1275 aa9.77□□□□□ -0.84
LIMCH1-202ENST00000381753 SAAL1Q96ER3 474 aa9.77□□□□□ -0.84
LIMCH1-202ENST00000381753 INSL6Q9Y581 213 aa9.77□□□□□ -0.84
LIMCH1-202ENST00000381753 SF3B1O75533 1304 aaKnown RBP eCLIP9.77□□□□□ -0.841e-8■■■■■ 160.4
LIMCH1-202ENST00000381753 UBA6A0AVT1 1052 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 BUB1O43683 1085 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 ASGR1P07306 291 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 FGFR2P21802 821 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 ALDH5A1P51649 535 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 C16orf86Q6ZW13 317 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 PABPC5Q96DU9 382 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 MXRA8Q9BRK3 442 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 NKX2-4Q9H2Z4 354 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 JADE1Q6IE81 842 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 TMEM35BQ8NCS4 154 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 CPB2Q96IY4 423 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 EIF3CQ99613 913 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 NLNQ9BYT8 704 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 TLR8Q9NR97 1041 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 SAE1Q9UBE0 346 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 AMFRQ9UKV5 643 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 PSMD12O00232 456 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 EIF3DO15371 548 aaKnown RBP eCLIP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 CCL16O15467 120 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 IGKV5-2P06315 115 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 IVLP07476 585 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 SPATA31D3P0C874 917 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 YBX3P16989 372 aaKnown RBP eCLIP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 DDX5P17844 614 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 CAPZA2P47755 286 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 MARSP56192 900 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 SPATA31D4Q6ZUB0 917 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 INTS8Q75QN2 995 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 HELQQ8TDG4 1101 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 GRK7Q8WTQ7 553 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 DNAJC1Q96KC8 554 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 MED15Q96RN5 788 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 SH2D3AQ9BRG2 576 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 PLA2G12BQ9BX93 195 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 RUVBL2Q9Y230 463 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 H3BRJ5 948 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 ADH1CP00326 375 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 KRT3P12035 628 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 INSRRP14616 1297 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 CYP2C18P33260 490 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 TPI1P60174 286 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 PFKPQ01813 784 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 TMEM259Q4ZIN3 620 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 NOMO2Q5JPE7 1267 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 SNAP47Q5SQN1 464 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 CINPQ9BW66 212 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 OLFML3Q9NRN5 406 aa9.77□□□□□ -0.85
LIMCH1-202ENST00000381753 NRXN1Q9ULB1 1477 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 SPDYE5A6NIY4 337 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 VWA5AO00534 786 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 STAT4Q14765 748 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 OVOS1Q6IE37 1185 aa9.76□□□□□ -0.85
LIMCH1-202ENST00000381753 UTP11Q9Y3A2 253 aaKnown RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms