RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	YLR012C	Q07927	99 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	RSA1	Q08932	381 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	YCT1	Q12235	531 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	PNS1	Q12412	539 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	TFS1	P14306	219 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	TFC1	P32367	649 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	YBR242W	P38331	238 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	CUE1	P38428	203 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	GAA1	P39012	614 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	TES1	P41903	349 aa	Known RBP	4.75	□□□□□ -1.65
NUP1	YOR098C	PEX31	P53203	462 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	YLR460C	P54007	376 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	CTL1	Q03220	320 aa	Known RBP	4.75	□□□□□ -1.65
NUP1	YOR098C	CCE1	Q03702	353 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	TPO3	Q06451	622 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	MHR1	Q06630	226 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	ESA1	Q08649	445 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	RPN6	Q12377	434 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	VPS52	P39904	641 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	PMT4	P46971	762 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	ASI3	P53983	676 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	SUE1	Q06524	206 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	EMP46	Q12396	444 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	YLR111W	Q12528	110 aa		4.75	□□□□□ -1.65
NUP1	YOR098C	URA6	P15700	204 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	SPT4	P32914	102 aa	Predicted RBP	4.74	□□□□□ -1.65
NUP1	YOR098C	SDS24	P38314	527 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	DIE2	P50076	525 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	UBC13	P52490	153 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	YMR099C	Q03161	297 aa	Known RBP	4.74	□□□□□ -1.65
NUP1	YOR098C	TIM18	Q08749	192 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	SME1	Q12330	94 aa	Predicted RBP	4.74	□□□□□ -1.65
NUP1	YOR098C	SPS100	P13130	326 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	CHA1	P25379	360 aa	Known RBP	4.74	□□□□□ -1.65
NUP1	YOR098C	YNK1	P36010	153 aa	Known RBP	4.74	□□□□□ -1.65
NUP1	YOR098C	MCH2	P36032	473 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	YIL169C	P40442	995 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	CIN2	P46670	268 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	BIR1	P47134	954 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	SWC4	P53201	476 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	ODC1	Q03028	310 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	DML1	Q03652	475 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	MRPL51	Q06090	140 aa	Predicted RBP	4.74	□□□□□ -1.65
NUP1	YOR098C	YEH2	Q07950	538 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	JLP2	P40206	208 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	DDC1	Q08949	612 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	YOR114W	Q12219	294 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	UTP23	Q12339	254 aa	Known RBP	4.74	□□□□□ -1.65
NUP1	YOR098C	PET20	Q99373	253 aa		4.74	□□□□□ -1.65
NUP1	YOR098C	FLO1	P32768	1537 aa		4.73	□□□□□ -1.65
NUP1	YOR098C	TPI1	P00942	248 aa	Known RBP	4.73	□□□□□ -1.65
NUP1	YOR098C	SRP102	P36057	244 aa	Predicted RBP	4.73	□□□□□ -1.65
NUP1	YOR098C	PRE6	P40303	254 aa	Known RBP	4.73	□□□□□ -1.65
NUP1	YOR098C	PEP8	P40335	379 aa		4.73	□□□□□ -1.65
NUP1	YOR098C	GAT1	P43574	510 aa		4.73	□□□□□ -1.65
NUP1	YOR098C	VHT1	P53241	593 aa		4.73	□□□□□ -1.65
NUP1	YOR098C	YMR166C	Q03829	368 aa		4.73	□□□□□ -1.65
NUP1	YOR098C	BSC1	Q12140	328 aa		4.73	□□□□□ -1.65
NUP1	YOR098C	HCH1	P53834	153 aa		4.73	□□□□□ -1.65
NUP1	YOR098C	YPR147C	Q06522	304 aa	Known RBP	4.73	□□□□□ -1.65
NUP1	YOR098C	MFG1	Q07684	458 aa		4.73	□□□□□ -1.65
NUP1	YOR098C	ICT1	Q12385	394 aa		4.73	□□□□□ -1.65
NUP1	YOR098C	RIF1	P29539	1916 aa		4.73	□□□□□ -1.65
NUP1	YOR098C	CBS2	P14905	389 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	SOK1	P40317	901 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	SFH5	P47008	294 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	PRP24	P49960	444 aa	Known RBP	4.72	□□□□□ -1.65
NUP1	YOR098C	IRC15	Q02733	499 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	RDL2	Q08742	149 aa	Known RBP	4.72	□□□□□ -1.65
NUP1	YOR098C	THP3	Q12049	470 aa	Known RBP	4.72	□□□□□ -1.65
NUP1	YOR098C	YDR018C	Q12185	396 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	LSO2	Q3E772	92 aa	Known RBP	4.72	□□□□□ -1.65
NUP1	YOR098C	YBR298C-A	Q8TGK4	73 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
NUP1	YOR098C	CPT1	P17898	393 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	CLG1	P35190	452 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	JEN1	P36035	616 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	SPC34	P36131	295 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	GOS1	P38736	223 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	NDT80	P38830	627 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	MSO1	P53604	210 aa	Known RBP	4.72	□□□□□ -1.65
NUP1	YOR098C	TIM8	P57744	87 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	YPR064W	Q12492	139 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	ARP6	Q12509	438 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	SLY1	P22213	666 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	COG3	P40094	801 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	DFG10	P40526	253 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	GWT1	P47026	490 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	NUP57	P48837	541 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	PRM6	Q04705	352 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	BSP1	Q06604	576 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	HRT3	Q12347	344 aa		4.72	□□□□□ -1.65
NUP1	YOR098C	PET494	P07390	489 aa	Predicted RBP	4.71	□□□□□ -1.66
NUP1	YOR098C	TRR1	P29509	319 aa	Known RBP	4.71	□□□□□ -1.66
NUP1	YOR098C	PHO89	P38361	574 aa		4.71	□□□□□ -1.66
NUP1	YOR098C	COG5	P53951	403 aa		4.71	□□□□□ -1.66
NUP1	YOR098C	TVP15	Q03860	143 aa		4.71	□□□□□ -1.66
NUP1	YOR098C	BCH1	Q05029	724 aa		4.71	□□□□□ -1.66
NUP1	YOR098C	SEN2	P16658	377 aa		4.71	□□□□□ -1.66
NUP1	YOR098C	CTS1	P29029	562 aa		4.71	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 45.5 ms