RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 KCNK12Q9HB15 430 aa18.92■□□□□ 0.62
CLN3-216ENST00000565316 TDRD15B5MCY1 1934 aaKnown RBP18.92■□□□□ 0.62
CLN3-216ENST00000565316 C2orf16Q68DN1 1984 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 PTGESO14684 152 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 TGM5O43548 720 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 RFPL2O75678 378 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 CREMQ03060 361 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 PRPF4BQ13523 1007 aaKnown RBP18.91■□□□□ 0.62
CLN3-216ENST00000565316 NAB2Q15742 525 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 ECM1Q16610 540 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 MAPK6Q16659 721 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 ASTLQ6HA08 431 aaPredicted RBP18.91■□□□□ 0.62
CLN3-216ENST00000565316 TMEM105Q8N8V8 129 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 RIN2Q8WYP3 895 aaPredicted RBP18.91■□□□□ 0.62
CLN3-216ENST00000565316 RABGGTAQ92696 567 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 PAAF1Q9BRP4 392 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 NT5C3AQ9H0P0 336 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 IGSF9Q9P2J2 1179 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 EPS15L1Q9UBC2 864 aa18.91■□□□□ 0.62
CLN3-216ENST00000565316 PLXNA3P51805 1871 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 TADA2AO75478 443 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 EDN1P05305 212 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 PRKCBP05771 671 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 SPATA31D3P0C874 917 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 CLCN5P51795 746 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 PDIA5Q14554 519 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 PPP2R5AQ15172 486 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 HAUS3Q68CZ6 603 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 SPATA31D4Q6ZUB0 917 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 PALB2Q86YC2 1186 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 SMG7Q92540 1137 aaKnown RBP18.9■□□□□ 0.62
CLN3-216ENST00000565316 KIF2CQ99661 725 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 SH2B1Q9NRF2 756 aaPredicted RBP18.9■□□□□ 0.62
CLN3-216ENST00000565316 ZDHHC7Q9NXF8 308 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 SNTG2Q9NY99 539 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 DUSP12Q9UNI6 340 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 CLUHO75153 1309 aa18.9■□□□□ 0.62
CLN3-216ENST00000565316 SF3B1O75533 1304 aaKnown RBP eCLIP18.9■□□□□ 0.623e-9■■■■■ 164.7
CLN3-216ENST00000565316 RECQL4O94761 1208 aa18.89■□□□□ 0.61
CLN3-216ENST00000565316 THP07101 528 aa18.89■□□□□ 0.61
CLN3-216ENST00000565316 U2AF2P26368 475 aaKnown RBP eCLIP18.89■□□□□ 0.61
CLN3-216ENST00000565316 EFNA5P52803 228 aa18.89■□□□□ 0.61
CLN3-216ENST00000565316 RTP2Q5QGT7 225 aa18.89■□□□□ 0.61
CLN3-216ENST00000565316 EEF1DP3Q658K8 133 aa18.89■□□□□ 0.61
CLN3-216ENST00000565316 DEPTORQ8TB45 409 aa18.89■□□□□ 0.61
CLN3-216ENST00000565316 STAMQ92783 540 aa18.89■□□□□ 0.61
CLN3-216ENST00000565316 CXCL16Q9H2A7 254 aa18.89■□□□□ 0.61
CLN3-216ENST00000565316 CACNG4Q9UBN1 327 aa18.89■□□□□ 0.61
CLN3-216ENST00000565316 USP20Q9Y2K6 914 aa18.89■□□□□ 0.61
CLN3-216ENST00000565316 RPL17P18621 184 aaKnown RBP18.88■□□□□ 0.61
CLN3-216ENST00000565316 CCT6AP40227 531 aaKnown RBP18.88■□□□□ 0.61
CLN3-216ENST00000565316 IGSF22Q8N9C0 903 aa18.88■□□□□ 0.61
CLN3-216ENST00000565316 PIK3R5Q8WYR1 880 aa18.88■□□□□ 0.61
CLN3-216ENST00000565316 KIFAP3Q92845 792 aa18.88■□□□□ 0.61
CLN3-216ENST00000565316 ATOH1Q92858 354 aaPredicted RBP18.88■□□□□ 0.61
CLN3-216ENST00000565316 ADPGKQ9BRR6 497 aa18.88■□□□□ 0.61
CLN3-216ENST00000565316 TTPALQ9BTX7 342 aa18.88■□□□□ 0.61
CLN3-216ENST00000565316 PRKD2Q9BZL6 878 aa18.88■□□□□ 0.61
CLN3-216ENST00000565316 BHMT2Q9H2M3 363 aa18.88■□□□□ 0.61
CLN3-216ENST00000565316 FAM86C1Q9NVL1 165 aa18.88■□□□□ 0.61
CLN3-216ENST00000565316 LRWD1Q9UFC0 647 aa18.88■□□□□ 0.61
CLN3-216ENST00000565316 NOL7Q9UMY1 257 aaKnown RBP18.88■□□□□ 0.61
CLN3-216ENST00000565316 STK24Q9Y6E0 443 aa18.88■□□□□ 0.61
CLN3-216ENST00000565316 DMDP11532 3685 aa18.88■□□□□ 0.61
CLN3-216ENST00000565316 MYO15AQ9UKN7 3530 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 WDR87Q6ZQQ6 2873 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 CASTOR2A6NHX0 329 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 KIF4AO95239 1232 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 MYBP10242 640 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 NPR3P17342 541 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 TOB1P50616 345 aaPredicted RBP18.87■□□□□ 0.61
CLN3-216ENST00000565316 NBR1Q14596 966 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 DCAF4L1Q3SXM0 396 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 NT5DC1Q5TFE4 455 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 CWF19L1Q69YN2 538 aaKnown RBP18.87■□□□□ 0.61
CLN3-216ENST00000565316 PRSS55Q6UWB4 352 aaPredicted RBP18.87■□□□□ 0.61
CLN3-216ENST00000565316 LNX1Q8TBB1 728 aaPredicted RBP18.87■□□□□ 0.61
CLN3-216ENST00000565316 NXPE3Q969Y0 559 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 IFT74Q96LB3 600 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 MYADMQ96S97 322 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 CLSTN3Q9BQT9 956 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 KIFC3Q9BVG8 833 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 MFSD1Q9H3U5 465 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 KIAA1024Q9UPX6 916 aa18.87■□□□□ 0.61
CLN3-216ENST00000565316 PROB1E7EW31 1015 aa18.86■□□□□ 0.61
CLN3-216ENST00000565316 H0Y858 1186 aa18.86■□□□□ 0.61
CLN3-216ENST00000565316 ZMYND10O75800 440 aa18.86■□□□□ 0.61
CLN3-216ENST00000565316 GBP2P32456 591 aaPredicted RBP18.86■□□□□ 0.61
CLN3-216ENST00000565316 ELAVL2Q12926 359 aaKnown RBP18.86■□□□□ 0.61
CLN3-216ENST00000565316 GNL2Q13823 731 aaKnown RBP18.86■□□□□ 0.61
CLN3-216ENST00000565316 TMEM132AQ24JP5 1023 aa18.86■□□□□ 0.61
CLN3-216ENST00000565316 FAM171A1Q5VUB5 890 aa18.86■□□□□ 0.61
CLN3-216ENST00000565316 GLYCTKQ8IVS8 523 aa18.86■□□□□ 0.61
CLN3-216ENST00000565316 FAM184AQ8NB25 1140 aa18.86■□□□□ 0.61
CLN3-216ENST00000565316 POLD4Q9HCU8 107 aa18.86■□□□□ 0.61
CLN3-216ENST00000565316 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.86■□□□□ 0.61
CLN3-216ENST00000565316 FBXW11Q9UKB1 542 aa18.86■□□□□ 0.61
CLN3-216ENST00000565316 MTCL1Q9Y4B5 1905 aaKnown RBP18.85■□□□□ 0.61
CLN3-216ENST00000565316 LIG1P18858 919 aa18.85■□□□□ 0.61
CLN3-216ENST00000565316 AOC1P19801 751 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms