RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 CDCA3Q99618 268 aaPredicted RBP11.68□□□□□ -0.54
UBR4-208ENST00000459947 TTYH1Q9H313 450 aaPredicted RBP11.68□□□□□ -0.54
UBR4-208ENST00000459947 RPF1Q9H9Y2 349 aaKnown RBP11.68□□□□□ -0.54
UBR4-208ENST00000459947 RECQL4O94761 1208 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 RPN1P04843 607 aaKnown RBP11.68□□□□□ -0.54
UBR4-208ENST00000459947 THP07101 528 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 KCNE1P15382 129 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 IBSPP21815 317 aaPredicted RBP11.68□□□□□ -0.54
UBR4-208ENST00000459947 TUSC3Q13454 348 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 KCNT2Q6UVM3 1135 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 C12orf56Q8IXR9 622 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 MRPL38Q96DV4 380 aaKnown RBP11.68□□□□□ -0.54
UBR4-208ENST00000459947 GBP3Q9H0R5 595 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 CWH43Q9H720 699 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 INPP5FQ9Y2H2 1132 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 ALDH2P05091 517 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 SRGAP2BP0DMP2 458 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 CYP3A5P20815 502 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 EHHADHQ08426 723 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 STIM1Q13586 685 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 NXF3Q9H4D5 531 aaKnown RBP11.68□□□□□ -0.54
UBR4-208ENST00000459947 ASB7Q9H672 318 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 NGRNQ9NPE2 291 aaKnown RBP11.68□□□□□ -0.54
UBR4-208ENST00000459947 TYW1Q9NV66 732 aaKnown RBP11.68□□□□□ -0.54
UBR4-208ENST00000459947 ANKFY1Q9P2R3 1169 aa11.68□□□□□ -0.54
UBR4-208ENST00000459947 A0A0B4J269 797 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 RHOBTB3O94955 611 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 C1RP00736 705 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 RPL9P32969 192 aaKnown RBP11.67□□□□□ -0.54
UBR4-208ENST00000459947 LONRF3Q496Y0 759 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 XKR4Q5GH76 650 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 USP37Q86T82 979 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 SLC39A11Q8N1S5 342 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 CDX2Q99626 313 aaPredicted RBP11.67□□□□□ -0.54
UBR4-208ENST00000459947 FAN1Q9Y2M0 1017 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 LCHNA4D1U4 455 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 ARL5CA6NH57 179 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 SMARCE1Q969G3 411 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 SNX27Q96L92 541 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 APOL6Q9BWW8 343 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 GDPD2Q9HCC8 539 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 AGO2Q9UKV8 859 aaKnown RBP11.67□□□□□ -0.54
UBR4-208ENST00000459947 TMEM189-UBE2V1I3L0A0 370 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 MYOGP15173 224 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 ENPEPQ07075 957 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 DSC1Q08554 894 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 COBLL1Q53SF7 1204 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 EPM2AIP1Q7L775 607 aaPredicted RBP11.67□□□□□ -0.54
UBR4-208ENST00000459947 ENGASEQ8NFI3 743 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 POMGNT1Q8WZA1 660 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 GAD1Q99259 594 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 SNTG2Q9NY99 539 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 CNTN3Q9P232 1028 aa11.67□□□□□ -0.54
UBR4-208ENST00000459947 UBQLN1Q9UMX0 589 aaKnown RBP11.67□□□□□ -0.54
UBR4-208ENST00000459947 ABLIM1O14639 778 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 CALUO43852 315 aaPredicted RBP11.66□□□□□ -0.54
UBR4-208ENST00000459947 DPYDQ12882 1025 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 TMEM174Q8WUU8 243 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 LPPQ93052 612 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 TRAPPC3O43617 180 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 PRPF40AO75400 957 aaKnown RBP11.66□□□□□ -0.54
UBR4-208ENST00000459947 MLH1P40692 756 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 BCAR1P56945 870 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 CUL4BQ13620 913 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 NFIL3Q16649 462 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 ARMCX5Q6P1M9 558 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 DDX53Q86TM3 631 aaKnown RBP11.66□□□□□ -0.54
UBR4-208ENST00000459947 TRIML1Q8N9V2 468 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 C17orf80Q9BSJ5 609 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 HERC2P3Q9BVR0 1158 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 GOLPH3LQ9H4A5 285 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 PRDM12Q9H4Q4 367 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 NSUN3Q9H649 340 aaKnown RBP11.66□□□□□ -0.54
UBR4-208ENST00000459947 NRDE2Q9H7Z3 1164 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 KIAA1671Q9BY89 1806 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 COL4A4P53420 1690 aaPredicted RBP11.66□□□□□ -0.54
UBR4-208ENST00000459947 GRIN2CQ14957 1233 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 KMT5BQ4FZB7 885 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 ZBTB33Q86T24 672 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 BEST2Q8NFU1 509 aa11.66□□□□□ -0.54
UBR4-208ENST00000459947 CACTINQ8WUQ7 758 aaKnown RBP11.66□□□□□ -0.54
UBR4-208ENST00000459947 EXTL3O43909 919 aa11.65□□□□□ -0.54
UBR4-208ENST00000459947 MBD3O95983 291 aa11.65□□□□□ -0.54
UBR4-208ENST00000459947 ADRB2P07550 413 aa11.65□□□□□ -0.54
UBR4-208ENST00000459947 RPL13P26373 211 aaKnown RBP11.65□□□□□ -0.54
UBR4-208ENST00000459947 SMC1AQ14683 1233 aaKnown RBP11.65□□□□□ -0.54
UBR4-208ENST00000459947 GUF1Q8N442 669 aaKnown RBP11.65□□□□□ -0.54
UBR4-208ENST00000459947 TSG101Q99816 390 aa11.65□□□□□ -0.54
UBR4-208ENST00000459947 OXCT2Q9BYC2 517 aaPredicted RBP11.65□□□□□ -0.54
UBR4-208ENST00000459947 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.65□□□□□ -0.546e-16■■□□□ 13.8
UBR4-208ENST00000459947 PLAGL2Q9UPG8 496 aa11.65□□□□□ -0.54
UBR4-208ENST00000459947 C2CD2Q9Y426 696 aa11.65□□□□□ -0.54
UBR4-208ENST00000459947 TRIOBPQ9H2D6 2365 aa11.65□□□□□ -0.54
UBR4-208ENST00000459947 PDXKO00764 312 aa11.65□□□□□ -0.54
UBR4-208ENST00000459947 FGF18O76093 207 aa11.65□□□□□ -0.54
UBR4-208ENST00000459947 PRKCSHP14314 528 aaPredicted RBP11.65□□□□□ -0.54
UBR4-208ENST00000459947 SCNN1GP51170 649 aa11.65□□□□□ -0.54
UBR4-208ENST00000459947 KNOP1Q1ED39 458 aaKnown RBP11.65□□□□□ -0.54
UBR4-208ENST00000459947 FOXR2Q6PJQ5 311 aa11.65□□□□□ -0.54
UBR4-208ENST00000459947 TMCO2Q7Z6W1 182 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms