RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 LMNAP02545 664 aaKnown RBP5.31□□□□□ -1.56
VPS29-202ENST00000447578 OCRLQ01968 901 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 ADCY1Q08828 1119 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 HLTFQ14527 1009 aaKnown RBP eCLIP5.31□□□□□ -1.56
VPS29-202ENST00000447578 MLC1Q15049 377 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 KIAA1841Q6NSI8 718 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 TIGD7Q6NT04 549 aaPredicted RBP5.31□□□□□ -1.56
VPS29-202ENST00000447578 PPP4R4Q6NUP7 873 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 KCNV1Q6PIU1 500 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 LRRC55Q6ZSA7 311 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 JPH3Q8WXH2 748 aaPredicted RBP5.31□□□□□ -1.56
VPS29-202ENST00000447578 CAMKK2Q96RR4 588 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 RPS6KC1Q96S38 1066 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 CPPED1Q9BRF8 314 aaPredicted RBP5.31□□□□□ -1.56
VPS29-202ENST00000447578 CPEB1Q9BZB8 566 aaKnown RBP5.31□□□□□ -1.56
VPS29-202ENST00000447578 OSBPL6Q9BZF3 934 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 ENKD1Q9H0I2 346 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 EPC1Q9H2F5 836 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 OXSMQ9NWU1 459 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 THG1LQ9NWX6 298 aaKnown RBP5.31□□□□□ -1.56
VPS29-202ENST00000447578 PACSIN3Q9UKS6 424 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 HS3ST4Q9Y661 456 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 AHRRA9YTQ3 701 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 MTSS1O43312 755 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 LPXNO60711 386 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 ALDH1A2O94788 518 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 PRKD3O94806 890 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 PCDH8O95206 1070 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 CT47B1P0C2W7 299 aaPredicted RBP5.3□□□□□ -1.56
VPS29-202ENST00000447578 MYBL2P10244 700 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 CASRP41180 1078 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 IL12RB1P42701 662 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 LSSP48449 732 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 KPNA1P52294 538 aaPredicted RBP5.3□□□□□ -1.56
VPS29-202ENST00000447578 FAM189BP81408 668 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 DSG1Q02413 1049 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 CD69Q07108 199 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 OS9Q13438 667 aaPredicted RBP5.3□□□□□ -1.56
VPS29-202ENST00000447578 HDAC1Q13547 482 aaPredicted RBP5.3□□□□□ -1.56
VPS29-202ENST00000447578 UBE4AQ14139 1066 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 DCAF17Q5H9S7 520 aaPredicted RBP5.3□□□□□ -1.56
VPS29-202ENST00000447578 FAM102BQ5T8I3 360 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 SLC4A10Q6U841 1118 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 SMC5Q8IY18 1101 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 VOPP1Q96AW1 172 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 RTFDC1Q9BY42 306 aaPredicted RBP5.3□□□□□ -1.56
VPS29-202ENST00000447578 ZMAT4Q9H898 229 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 IP6K2Q9UHH9 426 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 ZNHIT2Q9UHR6 403 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 LUC7L2Q9Y383 392 aaKnown RBP5.3□□□□□ -1.56
VPS29-202ENST00000447578 SPO11Q9Y5K1 396 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 NCAPD3P42695 1498 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 COL4A3Q01955 1670 aa5.3□□□□□ -1.56
VPS29-202ENST00000447578 CEP164Q9UPV0 1460 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.29□□□□□ -1.56
VPS29-202ENST00000447578 ELL2O00472 640 aaPredicted RBP5.29□□□□□ -1.56
VPS29-202ENST00000447578 EIF5BO60841 1220 aaKnown RBP5.29□□□□□ -1.56
VPS29-202ENST00000447578 ULK1O75385 1050 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 RFPL1O75677 317 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 RHOBTB3O94955 611 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 FSBPO95073 299 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 SNUPNO95149 360 aaKnown RBP5.29□□□□□ -1.56
VPS29-202ENST00000447578 MYL1P05976 194 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 ATP2A2P16615 1042 aaKnown RBP5.29□□□□□ -1.56
VPS29-202ENST00000447578 ABCB5Q2M3G0 1257 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 GFOD2Q3B7J2 385 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 TIGD2Q4W5G0 525 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 HDGFL2Q7Z4V5 671 aaPredicted RBP5.29□□□□□ -1.56
VPS29-202ENST00000447578 TCEAL8Q8IYN2 117 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 BEND2Q8NDZ0 799 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 OR5M3Q8NGP4 307 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 CHTF18Q8WVB6 975 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 HIST1H2AHQ96KK5 128 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 FAM193BQ96PV7 902 aaPredicted RBP5.29□□□□□ -1.56
VPS29-202ENST00000447578 HIST1H2AJQ99878 128 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 RIOX1Q9H6W3 641 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 ARNT2Q9HBZ2 717 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 EMC7Q9NPA0 242 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 SPTLC3Q9NUV7 552 aa5.29□□□□□ -1.56
VPS29-202ENST00000447578 EIF2B4Q9UI10 523 aaKnown RBP5.29□□□□□ -1.56
VPS29-202ENST00000447578 HMGXB3Q12766 1538 aa5.28□□□□□ -1.56
VPS29-202ENST00000447578 CENPVL1A0A0U1RR11 272 aa5.28□□□□□ -1.56
VPS29-202ENST00000447578 KRTAP29-1A8MX34 341 aaPredicted RBP5.28□□□□□ -1.56
VPS29-202ENST00000447578 EIF3JO75822 258 aaKnown RBP5.28□□□□□ -1.56
VPS29-202ENST00000447578 RECQL4O94761 1208 aa5.28□□□□□ -1.56
VPS29-202ENST00000447578 ABLIM3O94929 683 aa5.28□□□□□ -1.56
VPS29-202ENST00000447578 APOBEC3AP31941 199 aaPredicted RBP5.28□□□□□ -1.56
VPS29-202ENST00000447578 MAN2A1Q16706 1144 aa5.28□□□□□ -1.56
VPS29-202ENST00000447578 HECTD2Q5U5R9 776 aa5.28□□□□□ -1.56
VPS29-202ENST00000447578 NXNQ6DKJ4 435 aa5.28□□□□□ -1.56
VPS29-202ENST00000447578 KSR2Q6VAB6 950 aa5.28□□□□□ -1.56
VPS29-202ENST00000447578 XYLT1Q86Y38 959 aa5.28□□□□□ -1.56
VPS29-202ENST00000447578 PPP1R14CQ8TAE6 165 aa5.28□□□□□ -1.56
VPS29-202ENST00000447578 AHCYL2Q96HN2 611 aaKnown RBP5.28□□□□□ -1.56
VPS29-202ENST00000447578 FUBP3Q96I24 572 aaKnown RBP eCLIP5.28□□□□□ -1.56
VPS29-202ENST00000447578 LSM14BQ9BX40 385 aaKnown RBP5.28□□□□□ -1.56
VPS29-202ENST00000447578 KCNH6Q9H252 994 aa5.28□□□□□ -1.56
VPS29-202ENST00000447578 VTA1Q9NP79 307 aa5.28□□□□□ -1.56
VPS29-202ENST00000447578 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.28□□□□□ -1.56
VPS29-202ENST00000447578 ANKFY1Q9P2R3 1169 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms