RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 DARSP14868 501 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 FLT3P36888 993 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 THOC7Q6I9Y2 204 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 LRRC8DQ7L1W4 858 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 AGGF1Q8N302 714 aaeCLIP14.66□□□□□ -0.063e-6■□□□□ 11.3
CCDC88A-201ENST00000263630 KLHL25Q9H0H3 589 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 SEMA3EO15041 775 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 GTF2IP78347 998 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 ZNF827Q17R98 1081 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 SYDE1Q6ZW31 735 aaPredicted RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 MXD3Q9BW11 206 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 UBA2Q9UBT2 640 aaPredicted RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 SOWAHDA6NJG2 315 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 SRP72O76094 671 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 ENO1P06733 434 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 ALDH6A1Q02252 535 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 RC3H1Q5TC82 1133 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 PROM2Q8N271 834 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 ARL8AQ96BM9 186 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 CARD14Q9BXL6 1004 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 SERPINB13Q9UIV8 391 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 AATKQ6ZMQ8 1374 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 TBC1D10BQ4KMP7 808 aaPredicted RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 ZNF790Q6PG37 636 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 SCN4BQ8IWT1 228 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 SF3B1O75533 1304 aaKnown RBP eCLIP14.66□□□□□ -0.061e-6■■■■■ 114.6
CCDC88A-201ENST00000263630 PIPSLA2A3N6 862 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 CYBBP04839 570 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 CTSWP56202 376 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 MRPS35P82673 323 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 GSTA3Q16772 222 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 KYAT1Q16773 422 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 GPR141Q7Z602 305 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 ADCK2Q7Z695 626 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 C10orf53Q8N6V4 93 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 FLAD1Q8NFF5 587 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 PACSIN1Q9BY11 444 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 POLR3EQ9NVU0 708 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 TNKSO95271 1327 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 APOL1O14791 398 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 SDC4P31431 198 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 MAGEA10P43363 369 aaPredicted RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 TRIM25Q14258 630 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 CTNNAL1Q9UBT7 734 aa14.66□□□□□ -0.06
CCDC88A-201ENST00000263630 DENND3A2RUS2 1198 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 TRIQKQ629K1 86 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 TRIM65Q6PJ69 517 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 ELMO2Q96JJ3 720 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 USP28Q96RU2 1077 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 OSBPL9Q96SU4 736 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 ABCB6Q9NP58 842 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 AVENQ9NQS1 362 aaPredicted RBP14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 IQGAP2Q13576 1575 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 SOAT1P35610 550 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 ZAP70P43403 619 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 TTC33Q6PID6 262 aaPredicted RBP14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 NLRP14Q86W24 1093 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 EMILIN3Q9NT22 766 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 KIF24Q5T7B8 1368 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 JAK3P52333 1124 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 LLGL1Q15334 1064 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 DDX17Q92841 729 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 HDHD2Q9H0R4 259 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 PLOD1Q02809 727 aaPredicted RBP14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 RCN1Q15293 331 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 ALKBH5Q6P6C2 394 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 TMEM154Q6P9G4 183 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 GLMNQ92990 594 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 PKP3Q9Y446 797 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 PIK3CDO00329 1044 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 VAMP4O75379 141 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 MFN2O95140 757 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 EIF4A2Q14240 407 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 TAF1DQ9H5J8 278 aaPredicted RBP14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 RAD18Q9NS91 495 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 CARMIL3Q8ND23 1372 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 OSTNP61366 133 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 PMF1Q6P1K2 205 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 OR8H2Q8N162 312 aa14.65□□□□□ -0.06
CCDC88A-201ENST00000263630 E7ENQ6 273 aa14.65□□□□□ -0.07
CCDC88A-201ENST00000263630 KRT20P35900 424 aa14.65□□□□□ -0.07
CCDC88A-201ENST00000263630 GPR1P46091 355 aa14.65□□□□□ -0.07
CCDC88A-201ENST00000263630 KDSRQ06136 332 aa14.65□□□□□ -0.07
CCDC88A-201ENST00000263630 PUDPQ08623 228 aa14.65□□□□□ -0.07
CCDC88A-201ENST00000263630 FAM167AQ96KS9 214 aa14.65□□□□□ -0.07
CCDC88A-201ENST00000263630 NDUFA13Q9P0J0 144 aa14.65□□□□□ -0.07
CCDC88A-201ENST00000263630 UHRF1BP1Q6BDS2 1440 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 CLDN3O15551 220 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 PNMA6AP0CW24 399 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 DHX34Q14147 1143 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 CCDC81Q6ZN84 652 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 ZNF438Q7Z4V0 828 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 RIC8BQ9NVN3 520 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 PSMD12O00232 456 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 PALMO75781 387 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 TGFBR2P37173 567 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 PLA2G4AP47712 749 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 ST8SIA6P61647 398 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 OOSP2Q86WS3 158 aa14.64□□□□□ -0.07
CCDC88A-201ENST00000263630 KLHL20Q9Y2M5 609 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms