RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 POF1BQ8WVV4 589 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 PPP2R3CQ969Q6 453 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 BICD1Q96G01 975 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 RPS6KC1Q96S38 1066 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 GAD1Q99259 594 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 TMEM175Q9BSA9 504 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 KCNH3Q9ULD8 1083 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 LZTS1Q9Y250 596 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 USP20Q9Y2K6 914 aa18.96■□□□□ 0.63
SHKBP1-212ENST00000596163 ZC3H11AO75152 810 aaKnown RBP eCLIP18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 TOM1L1O75674 476 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 POMCP01189 267 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 EDN1P05305 212 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 MCF2P10911 925 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 IDEP14735 1019 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 MLH1P40692 756 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 BCAR1P56945 870 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 BMS1Q14692 1282 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 ZNF568Q3ZCX4 644 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 PDE12Q6L8Q7 609 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 MPZL3Q6UWV2 235 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 CEP57L1Q8IYX8 460 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 DNAJC19Q96DA6 116 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 CCDC94Q9BW85 323 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 GBP3Q9H0R5 595 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 ST6GALNAC4Q9H4F1 302 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 NRDE2Q9H7Z3 1164 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 PTPRHQ9HD43 1115 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 KBTBD4Q9NVX7 518 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 SNTG2Q9NY99 539 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 HCSTQ9UBK5 93 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 STK39Q9UEW8 545 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 CIZ1Q9ULV3 898 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 TBX20Q9UMR3 447 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 MYO9BQ13459 2157 aa18.95■□□□□ 0.62
SHKBP1-212ENST00000596163 CLDN3O15551 220 aa18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 MATR3P43243 847 aaKnown RBP eCLIP18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 LIG4P49917 911 aa18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 YARSP54577 528 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 GTF2BQ00403 316 aa18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 SKIV2LQ15477 1246 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 HERC4Q5GLZ8 1057 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 SLC39A11Q8N1S5 342 aa18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 MICAL1Q8TDZ2 1067 aa18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 MRPS27Q92552 414 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 HVCN1Q96D96 273 aa18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 TMEM169Q96HH4 297 aa18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 NSUN3Q9H649 340 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 MRPL44Q9H9J2 332 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 PANK4Q9NVE7 773 aa18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 USP25Q9UHP3 1055 aa18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 FAN1Q9Y2M0 1017 aa18.94■□□□□ 0.62
SHKBP1-212ENST00000596163 NCK2O43639 380 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 GALTP07902 379 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 PROZP22891 400 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 NMT1P30419 496 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 GRM5P41594 1212 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 SCNN1GP51170 649 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 GRIK3Q13003 919 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 ALCAMQ13740 583 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 KYAT1Q16773 422 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 ZNF720Q7Z2F6 126 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 ZBTB33Q86T24 672 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 SFR1Q86XK3 245 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 ZNF280BQ86YH2 543 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 CDT1Q9H211 546 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 TLR9Q9NR96 1032 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 TOPORSQ9NS56 1045 aaPredicted RBP18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 KLK14Q9P0G3 267 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 EXOC7Q9UPT5 735 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 GDAQ9Y2T3 454 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 PCDHB13Q9Y5F0 798 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 MYH15Q9Y2K3 1946 aa18.93■□□□□ 0.62
SHKBP1-212ENST00000596163 RALGAPA2Q2PPJ7 1873 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 A0A1W2PQ27 194 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 A0A1W2PQ64 194 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 A0A1W2PQD8 194 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 HNRNPDLO14979 420 aaKnown RBP18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 RECQL4O94761 1208 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 DDHD2O94830 711 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 PIGRP01833 764 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 CNNM4Q6P4Q7 775 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 STXBP4Q6ZWJ1 553 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 ZFP42Q96MM3 310 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 ACAP3Q96P50 834 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 FIZ1Q96SL8 496 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 C7orf25Q9BPX7 421 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 TRIM9Q9C026 710 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 OLFML3Q9NRN5 406 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 MIOSQ9NXC5 875 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 COG5Q9UP83 839 aa18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 FNDC1Q4ZHG4 1894 aaPredicted RBP18.92■□□□□ 0.62
SHKBP1-212ENST00000596163 A0A1B0GVL5 298 aa18.91■□□□□ 0.62
SHKBP1-212ENST00000596163 FRMD3A2A2Y4 597 aa18.91■□□□□ 0.62
SHKBP1-212ENST00000596163 GOLGA6L4A6NEF3 574 aa18.91■□□□□ 0.62
SHKBP1-212ENST00000596163 NT5C1B-RDH14C9J2C7 533 aa18.91■□□□□ 0.62
SHKBP1-212ENST00000596163 THP07101 528 aa18.91■□□□□ 0.62
SHKBP1-212ENST00000596163 SLFN14P0C7P3 912 aa18.91■□□□□ 0.62
SHKBP1-212ENST00000596163 PBX3P40426 434 aa18.91■□□□□ 0.62
SHKBP1-212ENST00000596163 SLC11A1P49279 550 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms