RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 EFHBQ8N7U6 833 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 KRI1Q8N9T8 703 aaKnown RBP17.83■□□□□ 0.44
TRIM28-206ENST00000595974 EPSTI1Q96J88 318 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 ZFP42Q96MM3 310 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 RPS6KC1Q96S38 1066 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 CDCA3Q99618 268 aaPredicted RBP17.83■□□□□ 0.44
TRIM28-206ENST00000595974 MRPL4Q9BYD3 311 aaKnown RBP17.83■□□□□ 0.44
TRIM28-206ENST00000595974 STK17AQ9UEE5 414 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 STK39Q9UEW8 545 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 CCDC39Q9UFE4 941 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 PARP2Q9UGN5 583 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 TNFSF13BQ9Y275 285 aa17.83■□□□□ 0.44
TRIM28-206ENST00000595974 SFI1A8K8P3 1242 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 H0YCG3 227 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 SLC16A4O15374 487 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 F13A1P00488 732 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 AKAP5P24588 427 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 GTF2F1P35269 517 aaKnown RBP eCLIP17.82■□□□□ 0.44
TRIM28-206ENST00000595974 DSC1Q08554 894 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 GRIK3Q13003 919 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 ADAM15Q13444 863 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 MCM6Q14566 821 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 SMC1AQ14683 1233 aaKnown RBP17.82■□□□□ 0.44
TRIM28-206ENST00000595974 BMS1Q14692 1282 aaKnown RBP17.82■□□□□ 0.44
TRIM28-206ENST00000595974 STK38Q15208 465 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 PUS10Q3MIT2 529 aaKnown RBP17.82■□□□□ 0.44
TRIM28-206ENST00000595974 SPECC1Q5M775 1068 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 NT5DC1Q5TFE4 455 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 USP49Q70CQ1 688 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 TAS1R3Q7RTX0 852 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 TMC7Q7Z402 723 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 DDX53Q86TM3 631 aaKnown RBP17.82■□□□□ 0.44
TRIM28-206ENST00000595974 COLGALT2Q8IYK4 626 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 LINC00301Q8NCQ3 95 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 CLIC6Q96NY7 704 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 REEP2Q9BRK0 252 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 IGFLR1Q9H665 355 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 TLE6Q9H808 572 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 USP20Q9Y2K6 914 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 MUC3AQ02505 3323 aa17.82■□□□□ 0.44
TRIM28-206ENST00000595974 NPHP3-ACAD11A0A0J9YXS1 232 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 H3BQ06 376 aaPredicted RBP17.81■□□□□ 0.44
TRIM28-206ENST00000595974 TBX10O75333 385 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 RECQL4O94761 1208 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 YEATS4O95619 227 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 ALDH2P05091 517 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 SCP2P22307 547 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 LTBRP36941 435 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 CACNB1Q02641 598 aaPredicted RBP17.81■□□□□ 0.44
TRIM28-206ENST00000595974 STRN3Q13033 797 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 DHX8Q14562 1220 aaKnown RBP17.81■□□□□ 0.44
TRIM28-206ENST00000595974 DUSP6Q16828 381 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 ZNF568Q3ZCX4 644 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 RBM23Q86U06 439 aaKnown RBP17.81■□□□□ 0.44
TRIM28-206ENST00000595974 TMEM161BQ8NDZ6 487 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 GSTCDQ8NEC7 633 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 BCL7CQ8WUZ0 217 aaPredicted RBP17.81■□□□□ 0.44
TRIM28-206ENST00000595974 KCNN1Q92952 543 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 UHRF1Q96T88 793 aaPredicted RBP17.81■□□□□ 0.44
TRIM28-206ENST00000595974 ACO2Q99798 780 aaKnown RBP17.81■□□□□ 0.44
TRIM28-206ENST00000595974 ZBP1Q9H171 429 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 FAN1Q9Y2M0 1017 aa17.81■□□□□ 0.44
TRIM28-206ENST00000595974 PDCD11Q14690 1871 aaKnown RBP17.81■□□□□ 0.44
TRIM28-206ENST00000595974 NRP1O14786 923 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 SPTLC2O15270 562 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 LINC01565O15544 149 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 PPP6R2O75170 966 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 NR1I2O75469 434 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 FAM13AO94988 1023 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 KRT18P05783 430 aaKnown RBP17.8■□□□□ 0.44
TRIM28-206ENST00000595974 DDIT3P35638 169 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 NDUFV1P49821 464 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 ZNF131P52739 623 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 NCKAP1LP55160 1127 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 PTCRAQ6ISU1 281 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-206ENST00000595974 VPS52Q8N1B4 723 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 SPRYD3Q8NCJ5 442 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-206ENST00000595974 CDT1Q9H211 546 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 PARVGQ9HBI0 331 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 MIOSQ9NXC5 875 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 SNTG2Q9NY99 539 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 KLK14Q9P0G3 267 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 FAM50BQ9Y247 325 aa17.8■□□□□ 0.44
TRIM28-206ENST00000595974 HIDE1A8MVS5 230 aa17.79■□□□□ 0.44
TRIM28-206ENST00000595974 TBCAO75347 108 aaKnown RBP17.79■□□□□ 0.44
TRIM28-206ENST00000595974 GLP2RO95838 553 aa17.79■□□□□ 0.44
TRIM28-206ENST00000595974 SRGAP2BP0DMP2 458 aa17.79■□□□□ 0.44
TRIM28-206ENST00000595974 MAPTP10636 758 aaKnown RBP17.79■□□□□ 0.44
TRIM28-206ENST00000595974 OR1G1P47890 313 aa17.79■□□□□ 0.44
TRIM28-206ENST00000595974 DLX2Q07687 328 aaPredicted RBP17.79■□□□□ 0.44
TRIM28-206ENST00000595974 GIT2Q14161 759 aa17.79■□□□□ 0.44
TRIM28-206ENST00000595974 FOXD4L5Q5VV16 416 aaPredicted RBP17.79■□□□□ 0.44
TRIM28-206ENST00000595974 RRAGBQ5VZM2 374 aa17.79■□□□□ 0.44
TRIM28-206ENST00000595974 ATL3Q6DD88 541 aa17.79■□□□□ 0.44
TRIM28-206ENST00000595974 CCDC73Q6ZRK6 1079 aa17.79■□□□□ 0.44
TRIM28-206ENST00000595974 MRPL43Q8N983 215 aaKnown RBP17.79■□□□□ 0.44
TRIM28-206ENST00000595974 FOXD4L4Q8WXT5 416 aaPredicted RBP17.79■□□□□ 0.44
TRIM28-206ENST00000595974 TARS2Q9BW92 718 aaKnown RBP17.79■□□□□ 0.44
TRIM28-206ENST00000595974 PTPRHQ9HD43 1115 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms