RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 V9GYY5 206 aaPredicted RBP19.74■□□□□ 0.75
CCDC88C-203ENST00000389856 GOLGA8IPA6NC78 632 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 GOLGA8JA6NMD2 632 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 INO80B-WBP1J3KQ70 363 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 RNF225M0QZC1 329 aaPredicted RBP19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 RARBP10826 455 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 PSEN2P49810 448 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 CYP24A1Q07973 514 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 ZNF569Q5MCW4 686 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 RSRC2Q7L4I2 434 aaKnown RBP19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 TXLNBQ8N3L3 684 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 TRIB2Q92519 343 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 SPAG5Q96R06 1193 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 NAPGQ99747 312 aaPredicted RBP19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 FAM213AQ9BRX8 229 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 TCHPQ9BT92 498 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 TARS2Q9BW92 718 aaKnown RBP19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 INO80BQ9C086 356 aaPredicted RBP19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 RNF186Q9NXI6 227 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 GABRQQ9UN88 632 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 A0A0B4J269 797 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 EIF3CLB5ME19 914 aaKnown RBP19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 SEPT4O43236 478 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 MSCO60682 206 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 TRIM49P0CI25 452 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 TRIM49CP0CI26 452 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 SMIM10L2AP0DMW4 78 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 SMIM10L2BP0DMW5 78 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 ARHGAP25P42331 645 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 MXI1P50539 228 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 GJA9P57773 515 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 PRPF4BQ13523 1007 aaKnown RBP19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 BMS1Q14692 1282 aaKnown RBP19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 FAM187BQ17R55 369 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 WHAMMP3Q1A5X7 153 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 SLC9C1Q4G0N8 1177 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 KLHDC7AQ5VTJ3 777 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 APBB1IPQ7Z5R6 666 aaPredicted RBP19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 CBWD2Q8IUF1 395 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 SCLT1Q96NL6 688 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 FNBP1Q96RU3 617 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 EIF3CQ99613 913 aaKnown RBP19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 GANQ9H2C0 597 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 FZD8Q9H461 694 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 ANKFY1Q9P2R3 1169 aa19.73■□□□□ 0.75
CCDC88C-203ENST00000389856 EVPLQ92817 2033 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 LRRC53A6NM62 1247 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 TRPA1O75762 1119 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 TUBBP07437 444 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 CCDC172P0C7W6 258 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 UCHL3P15374 230 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 C1QTNF8P60827 252 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 PCBP1Q15365 356 aaKnown RBP eCLIP19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 SURF1Q15526 300 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 KRT39Q6A163 491 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 NFRKBQ6P4R8 1299 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 SRGAP1Q7Z6B7 1085 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 ACRBPQ8NEB7 543 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 PARD3BQ8TEW8 1205 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 BAP1Q92560 729 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 FAM81BQ96LP2 452 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 TMEM8AQ9HCN3 771 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 FAM53CQ9NYF3 392 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 SRRDQ9UH36 339 aa19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 BZW2Q9Y6E2 419 aaKnown RBP19.72■□□□□ 0.75
CCDC88C-203ENST00000389856 SMIM35A0A1B0GVV1 85 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 HAS3O00219 553 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 NOL4O94818 638 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 ADRB2P07550 413 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 SLC9A1P19634 815 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 PRMT2P55345 433 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 PSMD6Q15008 389 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 KYAT1Q16773 422 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 TSHZ1Q6ZSZ6 1077 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 UBE2Q2Q8WVN8 375 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 CCDC127Q96BQ5 260 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 CCDC42Q96M95 316 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 ACO2Q99798 780 aaKnown RBP19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 MTG1Q9BT17 334 aaPredicted RBP19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 INTS2Q9H0H0 1204 aaKnown RBP19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 UPF3AQ9H1J1 476 aaKnown RBP19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 DEF6Q9H4E7 631 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 NLRC4Q9NPP4 1024 aa19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 LUC7LQ9NQ29 371 aaKnown RBP19.71■□□□□ 0.75
CCDC88C-203ENST00000389856 EPHB6O15197 1021 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 SERPING1P05155 500 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 C6orf222P0C671 652 aaPredicted RBP19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 AP3M2P53677 418 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 MBTD1Q05BQ5 628 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 ASIC2Q16515 512 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 ATF7IP2Q5U623 682 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 WDR59Q6PJI9 974 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 MPZL3Q6UWV2 235 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 LMBR1Q8WVP7 490 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 NLRP7Q8WX94 980 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 KAT2BQ92831 832 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 CHP1Q99653 195 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 TSGA10Q9BZW7 698 aa19.7■□□□□ 0.74
CCDC88C-203ENST00000389856 SETD4Q9NVD3 440 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms