RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	YDR018C	Q12185	396 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	YDL009C	Q12210	107 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	OCA6	Q12454	224 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	BI3	Q9ZZW7	517 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	RAD10	P06838	210 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	MRP2	P10663	115 aa	Predicted RBP	3.35	□□□□□ -1.87
NUP85	YJR042W	CPT1	P17898	393 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	ARF2	P19146	181 aa	Known RBP	3.35	□□□□□ -1.87
NUP85	YJR042W	YAP1	P19880	650 aa	Known RBP	3.35	□□□□□ -1.87
NUP85	YJR042W	PHO80	P20052	293 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	MRPL8	P22353	238 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	YCR006C	P25350	157 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	HOM6	P31116	359 aa	Known RBP	3.35	□□□□□ -1.87
NUP85	YJR042W	SGE1	P33335	543 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	MCR1	P36060	302 aa	Known RBP	3.35	□□□□□ -1.87
NUP85	YJR042W	HMT1	P38074	348 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	POP7	P38291	140 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	HAT2	P39984	401 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	THO1	P40040	218 aa	Known RBP	3.35	□□□□□ -1.87
NUP85	YJR042W	GVP36	P40531	326 aa	Known RBP	3.35	□□□□□ -1.87
NUP85	YJR042W	ADO1	P47143	340 aa	Known RBP	3.35	□□□□□ -1.87
NUP85	YJR042W	YJR141W	P47172	347 aa	Predicted RBP	3.35	□□□□□ -1.87
NUP85	YJR042W	SLD5	Q03406	294 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	HER2	Q03557	464 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	PEX10	Q05568	337 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	TDA6	Q06466	467 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	IES4	Q08561	116 aa		3.35	□□□□□ -1.87
NUP85	YJR042W	NOT5	Q12514	560 aa	Predicted RBP	3.35	□□□□□ -1.87
NUP85	YJR042W	DCC1	P25559	380 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	MGT1	P26188	188 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	YOX1	P34161	385 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	SWD2	P36104	329 aa	Predicted RBP	3.34	□□□□□ -1.87
NUP85	YJR042W	YPC1	P38298	316 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	COG3	P40094	801 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	MMF1	P40185	145 aa	Known RBP	3.34	□□□□□ -1.87
NUP85	YJR042W	HMS2	P47175	358 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	ASN1	P49089	572 aa	Known RBP	3.34	□□□□□ -1.87
NUP85	YJR042W	JAC1	P53193	184 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	GOR1	P53839	350 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	NUP100	Q02629	959 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	TRM44	Q02648	567 aa	Known RBP	3.34	□□□□□ -1.87
NUP85	YJR042W	CCE1	Q03702	353 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	MFG1	Q07684	458 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	MED7	Q08278	222 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	DAP1	Q12091	152 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	USB1	Q12208	290 aa	Known RBP	3.34	□□□□□ -1.87
NUP85	YJR042W	WTM1	Q12363	437 aa	Known RBP	3.34	□□□□□ -1.87
NUP85	YJR042W	PNS1	Q12412	539 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	YPL229W	Q99395	206 aa		3.34	□□□□□ -1.87
NUP85	YJR042W	UBR2	Q07963	1872 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	HIS1	P00498	297 aa	Known RBP	3.34	□□□□□ -1.88
NUP85	YJR042W	TUB1	P09733	447 aa	Known RBP	3.34	□□□□□ -1.88
NUP85	YJR042W	SNA3	P14359	133 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	RPC19	P28000	142 aa	Known RBP	3.34	□□□□□ -1.88
NUP85	YJR042W	YKL075C	P36083	450 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	YKR041W	P36134	250 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	TVP38	P36164	337 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	ROT2	P38138	954 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	AVT1	P47082	602 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	YJR149W	P47177	404 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	MNN10	P50108	393 aa	Known RBP	3.34	□□□□□ -1.88
NUP85	YJR042W	YGL039W	P53183	348 aa	Known RBP	3.34	□□□□□ -1.88
NUP85	YJR042W	COS6	P53344	381 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	SMX3	P54999	86 aa	Predicted RBP	3.34	□□□□□ -1.88
NUP85	YJR042W	BNA5	Q05979	453 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	TAZ1	Q06510	381 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	YPL199C	Q08954	240 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	YLR053C	Q12026	108 aa		3.34	□□□□□ -1.88
NUP85	YJR042W	TPK3	P05986	398 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	PUT1	P09368	476 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	3.33	□□□□□ -1.88	not detected
NUP85	YJR042W	QRI5	P32344	111 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	ETR1	P38071	380 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	IDP2	P41939	412 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	MST27	P53176	234 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	YNR014W	P53719	212 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	YNL095C	P53932	642 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	YDR248C	Q03786	193 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	YML096W	Q04489	525 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	3.33	□□□□□ -1.88	not detected
NUP85	YJR042W	SGT1	Q08446	395 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	MCA1	Q08601	432 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	RPN6	Q12377	434 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	CSR2	Q12734	1121 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	PET20	Q99373	253 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	ECM29	P38737	1868 aa		3.33	□□□□□ -1.88
NUP85	YJR042W	RPL7A	P05737	244 aa	Known RBP	3.32	□□□□□ -1.88
NUP85	YJR042W	MTF1	P14908	341 aa	Known RBP	3.32	□□□□□ -1.88
NUP85	YJR042W	SLY1	P22213	666 aa		3.32	□□□□□ -1.88
NUP85	YJR042W	MRPL9	P31334	269 aa		3.32	□□□□□ -1.88
NUP85	YJR042W	CLG1	P35190	452 aa		3.32	□□□□□ -1.88
NUP85	YJR042W	ECM13	P38195	257 aa		3.32	□□□□□ -1.88
NUP85	YJR042W	AIM3	P38266	947 aa	Known RBP	3.32	□□□□□ -1.88
NUP85	YJR042W	GOS1	P38736	223 aa		3.32	□□□□□ -1.88
NUP85	YJR042W	SFH5	P47008	294 aa		3.32	□□□□□ -1.88
NUP85	YJR042W	ORC5	P50874	479 aa		3.32	□□□□□ -1.88
NUP85	YJR042W	NBP35	P52920	328 aa		3.32	□□□□□ -1.88
NUP85	YJR042W	YIP1	P53039	248 aa		3.32	□□□□□ -1.88
NUP85	YJR042W	USE1	P53146	245 aa		3.32	□□□□□ -1.88
NUP85	YJR042W	SYF2	P53277	215 aa	Predicted RBP	3.32	□□□□□ -1.88

Retrieved 100 of 5,963 RNA–protein pairs in 38.7 ms