RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ATAT1Q5SQI0 421 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 ERICH6BQ5W0A0 696 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 COLGALT2Q8IYK4 626 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 KLHL5Q96PQ7 755 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 FAM193BQ96PV7 902 aaPredicted RBP19.04■□□□□ 0.64
CLN3-216ENST00000565316 PRRX2Q99811 253 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 EMILIN2Q9BXX0 1053 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 CSRNP2Q9H175 543 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 TSHZ2Q9NRE2 1034 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 USTQ9Y2C2 406 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 CACNA1HO95180 2353 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 ARL5CA6NH57 179 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 EIF5BO60841 1220 aaKnown RBP19.03■□□□□ 0.64
CLN3-216ENST00000565316 WEE2P0C1S8 567 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 GLRA2P23416 452 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 TXKP42681 527 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 MRE11P49959 708 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 CLCN4P51793 760 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 DSC1Q08554 894 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 NCBP1Q09161 790 aaKnown RBP19.03■□□□□ 0.64
CLN3-216ENST00000565316 ST3GAL1Q11201 340 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 KANK3Q6NY19 840 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 CABP7Q86V35 215 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 UBALD2Q8IYN6 164 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 ZDHHC14Q8IZN3 488 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 KREMEN2Q8NCW0 462 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 CPB2Q96IY4 423 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 MARCH5Q9NX47 278 aa19.03■□□□□ 0.64
CLN3-216ENST00000565316 INO80B-WBP1J3KQ70 363 aa19.02■□□□□ 0.64
CLN3-216ENST00000565316 SOD2P04179 222 aa19.02■□□□□ 0.64
CLN3-216ENST00000565316 CNPP09543 421 aaKnown RBP19.02■□□□□ 0.64
CLN3-216ENST00000565316 SPATA31C1P0DKV0 1188 aa19.02■□□□□ 0.64
CLN3-216ENST00000565316 ARF4P18085 180 aaPredicted RBP19.02■□□□□ 0.64
CLN3-216ENST00000565316 TRIM29Q14134 588 aa19.02■□□□□ 0.64
CLN3-216ENST00000565316 ZBTB33Q86T24 672 aa19.02■□□□□ 0.64
CLN3-216ENST00000565316 RNF168Q8IYW5 571 aaPredicted RBP19.02■□□□□ 0.64
CLN3-216ENST00000565316 PIGOQ8TEQ8 1089 aa19.02■□□□□ 0.64
CLN3-216ENST00000565316 GAD1Q99259 594 aa19.02■□□□□ 0.64
CLN3-216ENST00000565316 TMEM60Q9H2L4 133 aa19.02■□□□□ 0.64
CLN3-216ENST00000565316 SFXN1Q9H9B4 322 aa19.02■□□□□ 0.64
CLN3-216ENST00000565316 MRPL17Q9NRX2 175 aaKnown RBP19.02■□□□□ 0.64
CLN3-216ENST00000565316 SORCS3Q9UPU3 1222 aa19.02■□□□□ 0.64
CLN3-216ENST00000565316 GIT1Q9Y2X7 761 aa19.02■□□□□ 0.64
CLN3-216ENST00000565316 KLRC2P26717 231 aa19.01■□□□□ 0.63
CLN3-216ENST00000565316 PTPN5P54829 565 aa19.01■□□□□ 0.63
CLN3-216ENST00000565316 MTMR3Q13615 1198 aa19.01■□□□□ 0.63
CLN3-216ENST00000565316 GPR149Q86SP6 731 aa19.01■□□□□ 0.63
CLN3-216ENST00000565316 FEZF2Q8TBJ5 459 aa19.01■□□□□ 0.63
CLN3-216ENST00000565316 HERC2P3Q9BVR0 1158 aa19.01■□□□□ 0.63
CLN3-216ENST00000565316 POLR3FQ9H1D9 316 aaPredicted RBP19.01■□□□□ 0.63
CLN3-216ENST00000565316 MIOSQ9NXC5 875 aa19.01■□□□□ 0.63
CLN3-216ENST00000565316 HES2Q9Y543 173 aa19.01■□□□□ 0.63
CLN3-216ENST00000565316 ZMYM2Q9UBW7 1377 aa19.01■□□□□ 0.63
CLN3-216ENST00000565316 A0A1B0GUA9 196 aa19■□□□□ 0.63
CLN3-216ENST00000565316 POTEMA6NI47 508 aa19■□□□□ 0.63
CLN3-216ENST00000565316 BRD1O95696 1058 aa19■□□□□ 0.63
CLN3-216ENST00000565316 SSBP05455 408 aaKnown RBP eCLIP19■□□□□ 0.63
CLN3-216ENST00000565316 MLH1P40692 756 aa19■□□□□ 0.63
CLN3-216ENST00000565316 SCNN1GP51170 649 aa19■□□□□ 0.63
CLN3-216ENST00000565316 FOSBP53539 338 aa19■□□□□ 0.63
CLN3-216ENST00000565316 VCPP55072 806 aaKnown RBP19■□□□□ 0.63
CLN3-216ENST00000565316 TCF15Q12870 199 aa19■□□□□ 0.63
CLN3-216ENST00000565316 KIAA0319Q5VV43 1072 aa19■□□□□ 0.63
CLN3-216ENST00000565316 TMC5Q6UXY8 1006 aa19■□□□□ 0.63
CLN3-216ENST00000565316 TAS1R1Q7RTX1 841 aa19■□□□□ 0.63
CLN3-216ENST00000565316 PLCD3Q8N3E9 789 aa19■□□□□ 0.63
CLN3-216ENST00000565316 TDRD5Q8NAT2 981 aaKnown RBP19■□□□□ 0.63
CLN3-216ENST00000565316 GSTCDQ8NEC7 633 aa19■□□□□ 0.63
CLN3-216ENST00000565316 ZFP42Q96MM3 310 aa19■□□□□ 0.63
CLN3-216ENST00000565316 CCDC43Q96MW1 224 aaKnown RBP19■□□□□ 0.63
CLN3-216ENST00000565316 RPS6KC1Q96S38 1066 aa19■□□□□ 0.63
CLN3-216ENST00000565316 TUFT1Q9NNX1 390 aa19■□□□□ 0.63
CLN3-216ENST00000565316 DBR1Q9UK59 544 aaKnown RBP19■□□□□ 0.63
CLN3-216ENST00000565316 SSX2IPQ9Y2D8 614 aa19■□□□□ 0.63
CLN3-216ENST00000565316 PRG3Q9Y2Y8 225 aaPredicted RBP19■□□□□ 0.63
CLN3-216ENST00000565316 KMT2EQ8IZD2 1858 aa19■□□□□ 0.63
CLN3-216ENST00000565316 A0A087WWV3 80 aa19■□□□□ 0.63
CLN3-216ENST00000565316 B4GALT5O43286 388 aa19■□□□□ 0.63
CLN3-216ENST00000565316 URODP06132 367 aa19■□□□□ 0.63
CLN3-216ENST00000565316 AVPR2P30518 371 aa19■□□□□ 0.63
CLN3-216ENST00000565316 OR1G1P47890 313 aa19■□□□□ 0.63
CLN3-216ENST00000565316 SLC27A1Q6PCB7 646 aa19■□□□□ 0.63
CLN3-216ENST00000565316 PPP4R3CPQ6ZMV5 832 aa19■□□□□ 0.63
CLN3-216ENST00000565316 CATSPER3Q86XQ3 398 aa19■□□□□ 0.63
CLN3-216ENST00000565316 HACE1Q8IYU2 909 aa19■□□□□ 0.63
CLN3-216ENST00000565316 CMASQ8NFW8 434 aaPredicted RBP19■□□□□ 0.63
CLN3-216ENST00000565316 POLR3CQ9BUI4 534 aaPredicted RBP19■□□□□ 0.63
CLN3-216ENST00000565316 NXF3Q9H4D5 531 aaKnown RBP19■□□□□ 0.63
CLN3-216ENST00000565316 RXFP1Q9HBX9 757 aa19■□□□□ 0.63
CLN3-216ENST00000565316 USO1O60763 962 aaKnown RBP18.99■□□□□ 0.63
CLN3-216ENST00000565316 SEC24BO95487 1268 aa18.99■□□□□ 0.63
CLN3-216ENST00000565316 PDGFBP01127 241 aaPredicted RBP18.99■□□□□ 0.63
CLN3-216ENST00000565316 MCM7P33993 719 aa18.99■□□□□ 0.63
CLN3-216ENST00000565316 DSG1Q02413 1049 aa18.99■□□□□ 0.63
CLN3-216ENST00000565316 ORC2Q13416 577 aaPredicted RBP18.99■□□□□ 0.63
CLN3-216ENST00000565316 SAFBQ15424 915 aaKnown RBP eCLIP18.99■□□□□ 0.63
CLN3-216ENST00000565316 CDCA2Q69YH5 1023 aaPredicted RBP18.99■□□□□ 0.63
CLN3-216ENST00000565316 C15orf39Q6ZRI6 1047 aa18.99■□□□□ 0.63
CLN3-216ENST00000565316 MCPH1Q8NEM0 835 aa18.99■□□□□ 0.63
CLN3-216ENST00000565316 RHOBTB2Q9BYZ6 727 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms