RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	OXA1	P39952	402 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	YIL067C	P40514	678 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	YFR018C	P43599	363 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	YFR045W	P43617	309 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	RPN14	P53196	417 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	LST7	P53237	242 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	HST4	P53688	370 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	MPP6	P53725	186 aa	Predicted RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	YNL260C	P53846	198 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	NNT1	Q05874	261 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	ARC18	Q05933	178 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	ERP3	Q12403	225 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	DCP1	Q12517	231 aa	Predicted RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	YCR024C-B	Q3E7Z8	88 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	FSH3	Q99369	266 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	CBP2	P03874	630 aa	Predicted RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	RPS3	P05750	240 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	RAD7	P06779	565 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	RPL23A	P0CX41	137 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	RPL23B	P0CX42	137 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	NOP1	P15646	327 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	SUA5	P32579	426 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	ANP1	P32629	500 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	COG3	P40094	801 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	MEP1	P40260	492 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	YJL144W	P47009	104 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	LCB3	P47013	409 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	ILM1	P47155	203 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	CUR1	Q06469	252 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	YLH47	Q06493	454 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	RDL2	Q08742	149 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	GLE1	Q12315	538 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	LSO2	Q3E772	92 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	VTH1	P40438	1549 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	YEL009C-A	A0A023PZF2	135 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	RPS16A	P0CX51	143 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	RPS16B	P0CX52	143 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	PHO80	P20052	293 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	CAT2	P32796	670 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	MRPS5	P33759	307 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	YKR032W	P36127	104 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	MRPL3	P36516	390 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	RXT2	P38255	430 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	FZO1	P38297	855 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	TEM1	P38987	245 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	YIL089W	P40500	205 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	MRPL49	P40858	161 aa	Predicted RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	MNN5	P46982	586 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	JHD2	P47156	728 aa	Predicted RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	OSH6	Q02201	448 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	MRPS16	Q02608	121 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	YPL113C	Q02961	396 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	ENT5	Q03769	411 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	ARX1	Q03862	593 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	NAT4	Q04751	285 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	BUR2	Q05949	395 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	YLR446W	Q06204	433 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	DXO1	Q06349	442 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	CDD1	Q06549	142 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	SRO7	Q12038	1033 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	MRX4	Q12467	430 aa		0.74	□□□□□ -2.29
RKR1	YMR247C	CFT1	Q06632	1357 aa	Known RBP	0.74	□□□□□ -2.29
RKR1	YMR247C	SWI1	P09547	1314 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	RPL26A	P05743	127 aa	Known RBP	0.73	□□□□□ -2.29
RKR1	YMR247C	MET17	P06106	444 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	YLL053C	P0CD98	152 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	BGL2	P15703	313 aa	Known RBP	0.73	□□□□□ -2.29
RKR1	YMR247C	RPB4	P20433	221 aa	Predicted RBP	0.73	□□□□□ -2.29
RKR1	YMR247C	UTR5	P32630	166 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	RPC25	P35718	212 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	MCH2	P36032	473 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	YMR262W	P38430	313 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	LIN1	P38852	340 aa	Predicted RBP	0.73	□□□□□ -2.29
RKR1	YMR247C	EDC2	P40023	145 aa	Predicted RBP	0.73	□□□□□ -2.29
RKR1	YMR247C	KRE29	P40026	464 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	PCL7	P40186	285 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	DOT5	P40553	215 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	YFL040W	P43562	540 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	HIT1	P46973	164 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	YJR030C	P47101	745 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	BNS1	P50084	137 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	YPT32	P51996	222 aa	Known RBP	0.73	□□□□□ -2.29
RKR1	YMR247C	RPL26B	P53221	127 aa	Known RBP	0.73	□□□□□ -2.29
RKR1	YMR247C	BNI5	P53890	448 aa	Known RBP	0.73	□□□□□ -2.29
RKR1	YMR247C	KTR5	P53966	522 aa	Predicted RBP	0.73	□□□□□ -2.29
RKR1	YMR247C	MYO5	Q04439	1219 aa	Known RBP	0.73	□□□□□ -2.29
RKR1	YMR247C	ATP16	Q12165	160 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	EMC6	Q12431	108 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	NCB2	Q92317	146 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	RAD50	P12753	1312 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	ATP6	P00854	259 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	CYC3	P06182	269 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	DAP2	P18962	818 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	FAR1	P21268	830 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	PPH22	P23595	377 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	DPB2	P24482	689 aa	Predicted RBP	0.73	□□□□□ -2.29
RKR1	YMR247C	YCR022C	P25620	114 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	ICL1	P28240	557 aa	Predicted RBP	0.73	□□□□□ -2.29
RKR1	YMR247C	IES6	P32617	166 aa		0.73	□□□□□ -2.29
RKR1	YMR247C	SFC1	P33303	322 aa		0.73	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 46.7 ms