RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 GFM2Q969S9 779 aaKnown RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 FNBP1Q96RU3 617 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 TAF1DQ9H5J8 278 aaPredicted RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 RIOX1Q9H6W3 641 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 EVLQ9UI08 416 aaPredicted RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 FAM169AQ9Y6X4 670 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 SCN11AQ9UI33 1791 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 KCPQ6ZWJ8 1503 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 PSMC4P43686 418 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 CRKP46108 304 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 DLGAP5Q15398 846 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 C4orf46Q504U0 113 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 WDR59Q6PJI9 974 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 RELL1Q8IUW5 271 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 PPM1KQ8N3J5 372 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 C4orf32Q8N8J7 132 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 IMPG2Q9BZV3 1241 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 DMGDHQ9UI17 866 aaKnown RBP11.17□□□□□ -0.62
LIG1-220ENST00000601091 KDM1AO60341 852 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 MYCLP12524 364 aaPredicted RBP11.17□□□□□ -0.62
LIG1-220ENST00000601091 KLRC1P26715 233 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 STAT2P52630 851 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 LBRQ14739 615 aaKnown RBP11.17□□□□□ -0.62
LIG1-220ENST00000601091 NAB2Q15742 525 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 SLC7A5P1Q8MH63 180 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 HDAC7Q8WUI4 952 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 C2orf49Q9BVC5 232 aaPredicted RBP11.17□□□□□ -0.62
LIG1-220ENST00000601091 MUC3BQ9H195 1237 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 DNAJC12Q9UKB3 198 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 FGGP02679 453 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 UCHL3P15374 230 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 MESDQ14696 234 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 ZNF365Q70YC5 407 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 SP8Q8IXZ3 490 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 ATP6V0A1Q93050 837 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 CORO1BQ9BR76 489 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 PAPOLBQ9NRJ5 636 aaKnown RBP11.17□□□□□ -0.62
LIG1-220ENST00000601091 ARFGEF2Q9Y6D5 1785 aa11.17□□□□□ -0.62
LIG1-220ENST00000601091 ATP2A1O14983 1001 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 NPR1P16066 1061 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 GBP1P32455 592 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 IRAK1P51617 712 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 PLTPP55058 493 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 PLCB3Q01970 1234 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 APTXQ7Z2E3 356 aaKnown RBP11.16□□□□□ -0.62
LIG1-220ENST00000601091 DDX27Q96GQ7 796 aaKnown RBP11.16□□□□□ -0.62
LIG1-220ENST00000601091 FMO2Q99518 471 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 VCX3BQ9H321 246 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 KIAA1522Q9P206 1035 aaPredicted RBP11.16□□□□□ -0.62
LIG1-220ENST00000601091 TRIM17Q9Y577 477 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 ABCC6O95255 1503 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 TCP10L2B9ZVM9 353 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 GH2P01242 217 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 SP4Q02446 784 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 NPY5RQ15761 445 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 PODNQ7Z5L7 613 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 CCDC127Q96BQ5 260 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 DDX47Q9H0S4 455 aaKnown RBP11.16□□□□□ -0.62
LIG1-220ENST00000601091 NKIRAS1Q9NYS0 192 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 NOVA2Q9UNW9 492 aaKnown RBP11.16□□□□□ -0.62
LIG1-220ENST00000601091 PITPNM2Q9BZ72 1349 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 MYO1FO00160 1098 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 HGSO14964 777 aaPredicted RBP11.16□□□□□ -0.62
LIG1-220ENST00000601091 GAS8O95995 478 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 HSPA6P17066 643 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 GRM1Q13255 1194 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 C7orf57Q8NEG2 295 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 SUPT20HQ8NEM7 779 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 SPIRE2Q8WWL2 714 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 RBM41Q96IZ5 413 aaKnown RBP11.16□□□□□ -0.62
LIG1-220ENST00000601091 BEGAINQ9BUH8 593 aa11.16□□□□□ -0.62
LIG1-220ENST00000601091 UBE2TQ9NPD8 197 aaPredicted RBP11.16□□□□□ -0.62
LIG1-220ENST00000601091 BARX2Q9UMQ3 279 aaPredicted RBP11.16□□□□□ -0.62
LIG1-220ENST00000601091 PPIP5K2O43314 1243 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 ACTN1P12814 892 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 SLC9A1P19634 815 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 CARSP49589 748 aaKnown RBP11.15□□□□□ -0.62
LIG1-220ENST00000601091 MAIP1Q8WWC4 291 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 CRAMP1Q96RY5 1269 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 SLX1AQ9BQ83 275 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 TMEM206Q9H813 350 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 HOMER2Q9NSB8 354 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 A0A087X0T9 212 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 TBX3O15119 743 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 DKC1O60832 514 aaKnown RBP eCLIP11.15□□□□□ -0.621e-6■■□□□ 12.5
LIG1-220ENST00000601091 SUPT3HO75486 399 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 FAM228BP0C875 321 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 CD53P19397 219 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 ENPP1P22413 925 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 EIF3BP55884 814 aaKnown RBP11.15□□□□□ -0.62
LIG1-220ENST00000601091 AMPD2Q01433 879 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 IFT74Q96LB3 600 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 PNMA5Q96PV4 448 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 PCIF1Q9H4Z3 704 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 HOMER3Q9NSC5 361 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 BLOC1S4Q9NUP1 217 aa11.15□□□□□ -0.62
LIG1-220ENST00000601091 REXO2Q9Y3B8 237 aaKnown RBP11.15□□□□□ -0.62
LIG1-220ENST00000601091 SART1O43290 800 aaKnown RBP11.15□□□□□ -0.63
LIG1-220ENST00000601091 MTA2O94776 668 aa11.15□□□□□ -0.63
LIG1-220ENST00000601091 KRT14P02533 472 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms