RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 A0A0C4DFX4 3053 aa22.25■■□□□ 1.15
SS18-218ENST00000581021 GTPBP6O43824 516 aaPredicted RBP22.24■■□□□ 1.15
SS18-218ENST00000581021 B4GALT3O60512 393 aa22.24■■□□□ 1.15
SS18-218ENST00000581021 DNAJB1P25685 340 aa22.24■■□□□ 1.15
SS18-218ENST00000581021 PBX3P40426 434 aa22.24■■□□□ 1.15
SS18-218ENST00000581021 NPTX2P47972 431 aa22.24■■□□□ 1.15
SS18-218ENST00000581021 RAB27AP51159 221 aa22.24■■□□□ 1.15
SS18-218ENST00000581021 AFF1P51825 1210 aaKnown RBP22.24■■□□□ 1.15
SS18-218ENST00000581021 CAMK1Q14012 370 aa22.24■■□□□ 1.15
SS18-218ENST00000581021 NOTUMQ6P988 496 aa22.24■■□□□ 1.15
SS18-218ENST00000581021 MRPL10Q7Z7H8 261 aaKnown RBP22.24■■□□□ 1.15
SS18-218ENST00000581021 CHAMP1Q96JM3 812 aa22.24■■□□□ 1.15
SS18-218ENST00000581021 RNF39Q9H2S5 420 aa22.24■■□□□ 1.15
SS18-218ENST00000581021 RWDD3Q9Y3V2 267 aa22.24■■□□□ 1.15
SS18-218ENST00000581021 HES2Q9Y543 173 aa22.24■■□□□ 1.15
SS18-218ENST00000581021 CNTNAP2Q9UHC6 1331 aa22.24■■□□□ 1.15
SS18-218ENST00000581021 SFI1A8K8P3 1242 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 HOXA2O43364 376 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 ITGB1P05556 798 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 RB1P06400 928 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 PEX3P56589 373 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 CACNB1Q02641 598 aaPredicted RBP22.23■■□□□ 1.15
SS18-218ENST00000581021 FAM187BQ17R55 369 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 LRRC43Q8N309 656 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 KCTD17Q8N5Z5 321 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 KLHL23Q8NBE8 558 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 DEPTORQ8TB45 409 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 RAD54LQ92698 747 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 MRPL38Q96DV4 380 aaKnown RBP22.23■■□□□ 1.15
SS18-218ENST00000581021 CCDC51Q96ER9 411 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 CALML4Q96GE6 196 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 C11orf84Q9BUA3 381 aaPredicted RBP22.23■■□□□ 1.15
SS18-218ENST00000581021 PLVAPQ9BX97 442 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 C2orf40Q9H1Z8 148 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 ALG13Q9NP73 1137 aaKnown RBP22.23■■□□□ 1.15
SS18-218ENST00000581021 PLAGL2Q9UPG8 496 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 IPPQ9Y573 584 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 MYO7AQ13402 2215 aa22.23■■□□□ 1.15
SS18-218ENST00000581021 VCANP13611 3396 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 A0A087X0B3 334 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 A0A1B0GUA9 196 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 OFD1O75665 1012 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 PRKCBP05771 671 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 AXLP30530 894 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 MCM6Q14566 821 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 PPP2R5AQ15172 486 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 NAALADL2Q58DX5 795 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 TAS1R3Q7RTX0 852 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 ZBTB8OSQ8IWT0 167 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 ABI1Q8IZP0 508 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 KRI1Q8N9T8 703 aaKnown RBP22.22■■□□□ 1.15
SS18-218ENST00000581021 COLGALT1Q8NBJ5 622 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 NXF3Q9H4D5 531 aaKnown RBP22.22■■□□□ 1.15
SS18-218ENST00000581021 PDZD7Q9H5P4 517 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 PRMT7Q9NVM4 692 aaPredicted RBP22.22■■□□□ 1.15
SS18-218ENST00000581021 LMCD1Q9NZU5 365 aa22.22■■□□□ 1.15
SS18-218ENST00000581021 CSPG5O95196 566 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 BRD1O95696 1058 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 SKIP12755 728 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 LIG1P18858 919 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 NCLP19338 710 aaKnown RBP22.21■■□□□ 1.15
SS18-218ENST00000581021 DHX8Q14562 1220 aaKnown RBP22.21■■□□□ 1.15
SS18-218ENST00000581021 STK38Q15208 465 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 NT5DC1Q5TFE4 455 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 EEF1DP3Q658K8 133 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 GPBP1Q86WP2 473 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 SPPL3Q8TCT6 385 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 P2RX5Q93086 422 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 IFT74Q96LB3 600 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 PRIMPOLQ96LW4 560 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 DRC1Q96MC2 740 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 REEP2Q9BRK0 252 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 TBC1D13Q9NVG8 400 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 ARHGAP28Q9P2N2 729 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 INPP5FQ9Y2H2 1132 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 PLXNA4Q9HCM2 1894 aa22.21■■□□□ 1.15
SS18-218ENST00000581021 ACKR2O00590 384 aa22.2■■□□□ 1.14
SS18-218ENST00000581021 SPTLC2O15270 562 aa22.2■■□□□ 1.14
SS18-218ENST00000581021 NPTXRO95502 500 aa22.2■■□□□ 1.14
SS18-218ENST00000581021 MAPK6Q16659 721 aa22.2■■□□□ 1.14
SS18-218ENST00000581021 GLB1LQ6UWU2 654 aa22.2■■□□□ 1.14
SS18-218ENST00000581021 RASSF8Q8NHQ8 419 aa22.2■■□□□ 1.14
SS18-218ENST00000581021 ZNF396Q96N95 335 aaPredicted RBP22.2■■□□□ 1.14
SS18-218ENST00000581021 TIPINQ9BVW5 301 aa22.2■■□□□ 1.14
SS18-218ENST00000581021 DAXXQ9UER7 740 aaPredicted RBP22.2■■□□□ 1.14
SS18-218ENST00000581021 PCDHGC5Q9Y5F6 944 aa22.2■■□□□ 1.14
SS18-218ENST00000581021 CCDC169A6NNP5 214 aa22.19■■□□□ 1.14
SS18-218ENST00000581021 YEATS4O95619 227 aa22.19■■□□□ 1.14
SS18-218ENST00000581021 PDIA4P13667 645 aaKnown RBP22.19■■□□□ 1.14
SS18-218ENST00000581021 DNM1Q05193 864 aaKnown RBP22.19■■□□□ 1.14
SS18-218ENST00000581021 DMP1Q13316 513 aaPredicted RBP22.19■■□□□ 1.14
SS18-218ENST00000581021 PRPF4BQ13523 1007 aaKnown RBP22.19■■□□□ 1.14
SS18-218ENST00000581021 NOMO2Q5JPE7 1267 aa22.19■■□□□ 1.14
SS18-218ENST00000581021 SPOUT1Q5T280 376 aaKnown RBP22.19■■□□□ 1.14
SS18-218ENST00000581021 SLC27A1Q6PCB7 646 aa22.19■■□□□ 1.14
SS18-218ENST00000581021 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.19■■□□□ 1.14
SS18-218ENST00000581021 LARP4BQ92615 738 aaKnown RBP22.19■■□□□ 1.14
SS18-218ENST00000581021 RSAD1Q9HA92 442 aa22.19■■□□□ 1.14
SS18-218ENST00000581021 KCND2Q9NZV8 630 aa22.19■■□□□ 1.14
SS18-218ENST00000581021 BRWD1Q9NSI6 2320 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms