RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 RPS6KC1Q96S38 1066 aa5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 REEP2Q9BRK0 252 aa5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 C11orf84Q9BUA3 381 aaPredicted RBP5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 TRAIPQ9BWF2 469 aa5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 MRPL4Q9BYD3 311 aaKnown RBP5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 TMEM117Q9H0C3 514 aa5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 SEMA6BQ9H3T3 888 aa5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 MINDY3Q9H8M7 445 aa5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 FAM105AQ9NUU6 356 aa5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 SEL1LQ9UBV2 794 aa5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 RCOR1Q9UKL0 485 aa5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 MTUS1Q9ULD2 1270 aa5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 PCDHB2Q9Y5E7 798 aa5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 PCDHB12Q9Y5F1 795 aa5.95□□□□□ -1.46
HMGB1P40-201ENST00000525121 LCHNA4D1U4 455 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 LINC01553A4QN01 128 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 ACKR2O00590 384 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 SLC16A4O15374 487 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 TRAK2O60296 914 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 NR1I2O75469 434 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 NPTXRO95502 500 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 RB1P06400 928 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 FGFR1P11362 822 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 ITGA4P13612 1032 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 IDEP14735 1019 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 ARF4P18085 180 aaPredicted RBP5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 LAG3P18627 525 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 IGFBP4P22692 258 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 PPM1AP35813 382 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 MATR3P43243 847 aaKnown RBP eCLIP5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 ERVK-21P61565 698 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 FAM189BP81408 668 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 CACNB1Q02641 598 aaPredicted RBP5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 ALCAMQ13740 583 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 BMS1Q14692 1282 aaKnown RBP5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 ZNF568Q3ZCX4 644 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 NOMO2Q5JPE7 1267 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 ATF7IP2Q5U623 682 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 RESP18Q5W5W9 173 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 SHC4Q6S5L8 630 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 USP49Q70CQ1 688 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 DYMQ7RTS9 669 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 RTN4RL1Q86UN2 441 aaPredicted RBP5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 FAM178BQ8IXR5 827 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 CCDC65Q8IXS2 484 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 TMEM192Q8IY95 271 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 BSNDQ8WZ55 320 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 DDX12PQ92771 950 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 CCDC47Q96A33 483 aaKnown RBP5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 CPB2Q96IY4 423 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 ZNF558Q96NG5 402 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 FAM193BQ96PV7 902 aaPredicted RBP5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 CDX2Q99626 313 aaPredicted RBP5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 TCHPQ9BT92 498 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 KIFC3Q9BVG8 833 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 APOL6Q9BWW8 343 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 PLVAPQ9BX97 442 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 PANK2Q9BZ23 570 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 TNMDQ9H2S6 317 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 TTYH1Q9H313 450 aaPredicted RBP5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 FZD8Q9H461 694 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 PRDM12Q9H4Q4 367 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 TMEM134Q9H6X4 195 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 CERS4Q9HA82 394 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 RSAD1Q9HA92 442 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 BLOC1S4Q9NUP1 217 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 MTMR10Q9NXD2 777 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 CHMP5Q9NZZ3 219 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 KANSL3Q9P2N6 904 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 USP25Q9UHP3 1055 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 KCNH3Q9ULD8 1083 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 PCDHA7Q9UN72 937 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 EXOC7Q9UPT5 735 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 INPP5FQ9Y2H2 1132 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 ARID2Q68CP9 1835 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 COL4A6Q14031 1691 aa5.94□□□□□ -1.46
HMGB1P40-201ENST00000525121 TRIP12Q14669 1992 aaPredicted RBP5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 TRIOBPQ9H2D6 2365 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 SIP14410 1827 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 NPHP3-ACAD11A0A0J9YXS1 232 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 A0A1B0GUA9 196 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 SFI1A8K8P3 1242 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 HNRNPDLO14979 420 aaKnown RBP5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 POLR2DO15514 142 aaKnown RBP5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 B4GALT5O43286 388 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 ZNF623O75123 536 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 KCNA4P22459 653 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 CMA1P23946 247 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 HOXA11P31270 313 aaPredicted RBP5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 BMPR1AP36894 532 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 SYKP43405 635 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 ALDH7A1P49419 539 aaKnown RBP5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 LIG4P49917 911 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 YARSP54577 528 aaKnown RBP5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 ASIC1P78348 528 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 KRT17Q04695 432 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 MAPK7Q13164 816 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 GPM6BQ13491 265 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 GIT2Q14161 759 aa5.93□□□□□ -1.46
HMGB1P40-201ENST00000525121 GRIN2CQ14957 1233 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms