RNA–Protein interactions for RNA: ENST00000488897.5

COL16A1-215, Transcript of collagen type XVI alpha 1 chain, human

TSL 1 (best)

Gene COL16A1, Length 2,423 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COL16A1-215	ENST00000488897	SHOX2	O60902	331 aa	Predicted RBP	19.93	■□□□□ 0.78
COL16A1-215	ENST00000488897	NOL4	O94818	638 aa		19.93	■□□□□ 0.78
COL16A1-215	ENST00000488897		Q4G0T1	1027 aa		19.93	■□□□□ 0.78
COL16A1-215	ENST00000488897	MFSD14C	Q5VZR4	134 aa		19.93	■□□□□ 0.78
COL16A1-215	ENST00000488897	C8orf74	Q6P047	294 aa		19.93	■□□□□ 0.78
COL16A1-215	ENST00000488897	CCDC62	Q6P9F0	684 aa		19.93	■□□□□ 0.78
COL16A1-215	ENST00000488897	FOXR1	Q6PIV2	292 aa		19.93	■□□□□ 0.78
COL16A1-215	ENST00000488897	ZNF467	Q7Z7K2	595 aa	Predicted RBP	19.93	■□□□□ 0.78
COL16A1-215	ENST00000488897	C10orf67	Q8IYJ2	551 aa		19.93	■□□□□ 0.78
COL16A1-215	ENST00000488897	UNC45A	Q9H3U1	944 aa		19.93	■□□□□ 0.78
COL16A1-215	ENST00000488897	RSPH14	Q9UHP6	348 aa		19.93	■□□□□ 0.78
COL16A1-215	ENST00000488897	ZBTB39	O15060	712 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	NCK2	O43639	380 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	CYBA	P13498	195 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	TNFAIP2	Q03169	654 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	LRCH2	Q5VUJ6	765 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	TRIM50	Q86XT4	487 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	CAVIN3	Q969G5	261 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	PSMB7	Q99436	277 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	LSM14B	Q9BX40	385 aa	Known RBP	19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	SYNGAP1	Q96PV0	1343 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	BUB1	O43683	1085 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	SSB	P05455	408 aa	Known RBP eCLIP	19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	SLC7A5	Q01650	507 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	CYP4A11	Q02928	519 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	PPFIA1	Q13136	1202 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	NNT	Q13423	1086 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	IRF5	Q13568	498 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	CTU1	Q7Z7A3	348 aa	Known RBP	19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	TRIM59	Q8IWR1	403 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	MBOAT7	Q96N66	472 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	SH3GL2	Q99962	352 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	RGL1	Q9NZL6	768 aa		19.92	■□□□□ 0.78
COL16A1-215	ENST00000488897	TMEM150B	A6NC51	233 aa		19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	NAB2	Q15742	525 aa		19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	GBP6	Q6ZN66	633 aa		19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	NLRX1	Q86UT6	975 aa		19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	SAMM50	Q9Y512	469 aa		19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	GAS7	O60861	476 aa		19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	HMGCR	P04035	888 aa		19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	POLR2F	P61218	127 aa	Known RBP	19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	GNPTAB	Q3T906	1256 aa		19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	IFT20	Q8IY31	132 aa		19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	HINFP	Q9BQA5	517 aa		19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	PCDHA2	Q9Y5H9	948 aa		19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	ZNF236	Q9UL36	1845 aa		19.91	■□□□□ 0.78
COL16A1-215	ENST00000488897	TRIM66	O15016	1216 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	PLA2G4B	P0C869	781 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	SLC18A3	Q16572	532 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	COL13A1	Q5TAT6	717 aa	Predicted RBP	19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	PPP4R3CP	Q6ZMV5	832 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	GPIHBP1	Q8IV16	184 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	RBM12	Q9NTZ6	932 aa	Known RBP	19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	KIAA1024	Q9UPX6	916 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	GRID2IP	A4D2P6	1211 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	HSF2BP	O75031	334 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	PSMD10	O75832	226 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	EPB41	P11171	864 aa	Known RBP	19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	HERC4	Q5GLZ8	1057 aa	Predicted RBP	19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	DHX37	Q8IY37	1157 aa	Known RBP	19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	AFG1L	Q8WV93	481 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	GPRASP2	Q96D09	838 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	RUFY1	Q96T51	708 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	SMARCAL1	Q9NZC9	954 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	EHD2	Q9NZN4	543 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	AIPL1	Q9NZN9	384 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	VAV3	Q9UKW4	847 aa		19.9	■□□□□ 0.78
COL16A1-215	ENST00000488897	FARP2	O94887	1054 aa	Predicted RBP	19.89	■□□□□ 0.77
COL16A1-215	ENST00000488897	SPIRE1	Q08AE8	756 aa		19.89	■□□□□ 0.77
COL16A1-215	ENST00000488897	TTLL4	Q14679	1199 aa		19.89	■□□□□ 0.77
COL16A1-215	ENST00000488897	MCTP2	Q6DN12	878 aa		19.89	■□□□□ 0.77
COL16A1-215	ENST00000488897	BANK1	Q8NDB2	785 aa		19.89	■□□□□ 0.77
COL16A1-215	ENST00000488897	SCFD2	Q8WU76	684 aa		19.89	■□□□□ 0.77
COL16A1-215	ENST00000488897	SLC5A5	Q92911	643 aa		19.89	■□□□□ 0.77
COL16A1-215	ENST00000488897	SPATA33	Q96N06	139 aa		19.89	■□□□□ 0.77
COL16A1-215	ENST00000488897	TBC1D7	Q9P0N9	293 aa		19.89	■□□□□ 0.77
COL16A1-215	ENST00000488897	WRAP73	Q9P2S5	460 aa	Predicted RBP	19.89	■□□□□ 0.77
COL16A1-215	ENST00000488897		E9PMD0	336 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	PALM	O75781	387 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	CLSTN1	O94985	981 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	EDRF1	Q3B7T1	1238 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	GPBP1	Q86WP2	473 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	ZC3H3	Q8IXZ2	948 aa	Known RBP	19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	ZBTB10	Q96DT7	871 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	MCOLN1	Q9GZU1	580 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	KCTD10	Q9H3F6	313 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	POLD4	Q9HCU8	107 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	VTA1	Q9NP79	307 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897		A6NNZ2	444 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	ZNF286B	P0CG31	522 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	ARHGAP1	Q07960	439 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	ADAM9	Q13443	819 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	CTTN	Q14247	550 aa	Known RBP	19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	UGCG	Q16739	394 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	TUBB8	Q3ZCM7	444 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	DNAJC21	Q5F1R6	531 aa	Known RBP	19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	NELFCD	Q8IXH7	590 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	PXYLP1	Q8TE99	480 aa		19.88	■□□□□ 0.77
COL16A1-215	ENST00000488897	DEFB118	Q96PH6	123 aa		19.88	■□□□□ 0.77

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms