RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PHLDB1Q86UU1 1377 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 ABCC8Q09428 1581 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 FOXN1O15353 648 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 KATNA1O75449 491 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 ASLP04424 464 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 MECP2P51608 486 aaKnown RBP5.43□□□□□ -1.54
VPS29-202ENST00000447578 ROM1Q03395 351 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 COL10A1Q03692 680 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 CFAP100Q494V2 611 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 RNF219Q5W0B1 726 aaPredicted RBP5.43□□□□□ -1.54
VPS29-202ENST00000447578 LAIR1Q6GTX8 287 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 SLFN12LQ6IEE8 588 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 WDR75Q8IWA0 830 aaKnown RBP5.43□□□□□ -1.54
VPS29-202ENST00000447578 CCAR1Q8IX12 1150 aaKnown RBP5.43□□□□□ -1.54
VPS29-202ENST00000447578 PLA2G15Q8NCC3 412 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 TSR2Q969E8 191 aaKnown RBP5.43□□□□□ -1.54
VPS29-202ENST00000447578 MAML3Q96JK9 1138 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 CRAMP1Q96RY5 1269 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 PRRX2Q99811 253 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 TCF25Q9BQ70 676 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 IL23AQ9NPF7 189 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 DNAI1Q9UI46 699 aa5.43□□□□□ -1.54
VPS29-202ENST00000447578 FAM83GA6ND36 823 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 PRC1O43663 620 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 KPNA6O60684 536 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 GLRX3O76003 335 aaKnown RBP5.42□□□□□ -1.54
VPS29-202ENST00000447578 TOX4O94842 621 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 JMJD7P0C870 316 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 POU3F2P20265 443 aaPredicted RBP5.42□□□□□ -1.54
VPS29-202ENST00000447578 IGFALSP35858 605 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 FNTBP49356 437 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 RABGGTBP53611 331 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 ITKQ08881 620 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 ZNF460Q14592 562 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 DHCR24Q15392 516 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 NFE2Q16621 373 aaPredicted RBP5.42□□□□□ -1.54
VPS29-202ENST00000447578 FKBP15Q5T1M5 1219 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 CLEC14AQ86T13 490 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 CCDC146Q8IYE0 955 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 MB21D1Q8N884 522 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 DYDC2Q96IM9 177 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 C8orf48Q96LL4 319 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 MTFR1LQ9H019 292 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 RCAN3Q9UKA8 241 aa5.42□□□□□ -1.54
VPS29-202ENST00000447578 UBA6A0AVT1 1052 aaPredicted RBP5.41□□□□□ -1.54
VPS29-202ENST00000447578 KLRG2A4D1S0 409 aaPredicted RBP5.41□□□□□ -1.54
VPS29-202ENST00000447578 BRINP1O60477 761 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 PEX14O75381 377 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 HNRNPLP14866 589 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS29-202ENST00000447578 PTX3P26022 381 aaPredicted RBP5.41□□□□□ -1.54
VPS29-202ENST00000447578 SCNN1BP51168 640 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 PPP2R5AQ15172 486 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 PRAMEF9Q5VWM5 478 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 C1QL3Q5VWW1 255 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 KRT40Q6A162 431 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 NECAB2Q7Z6G3 386 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 MRGPREQ86SM8 312 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 VRK3Q8IV63 474 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 GPR150Q8NGU9 434 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 ATXN2LQ8WWM7 1075 aaKnown RBP5.41□□□□□ -1.54
VPS29-202ENST00000447578 USP7Q93009 1102 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 E2F7Q96AV8 911 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 WDR92Q96MX6 357 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 TUBGCP5Q96RT8 1024 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 MNTQ99583 582 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 TTC1Q99614 292 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 KCMF1Q9P0J7 381 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 SAMD15Q9P1V8 674 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 NCDNQ9UBB6 729 aa5.41□□□□□ -1.54
VPS29-202ENST00000447578 B4E1Z4 1266 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 TRAF5O00463 557 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 GPR39O43194 453 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 TPD52L2O43399 206 aaKnown RBP5.4□□□□□ -1.54
VPS29-202ENST00000447578 TSPAN6O43657 245 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 PPFIA2O75334 1257 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 STC2O76061 302 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 VSIG10L2P0DP72 767 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 BMP5P22003 454 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 TBX4P57082 545 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 STAT4Q14765 748 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 MYBPC3Q14896 1274 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 ARHGAP44Q17R89 818 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 GAGE13Q4V321 117 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 RABL3Q5HYI8 236 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 TTC38Q5R3I4 469 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 CDCA2Q69YH5 1023 aaPredicted RBP5.4□□□□□ -1.54
VPS29-202ENST00000447578 ZCCHC8Q6NZY4 707 aaKnown RBP5.4□□□□□ -1.54
VPS29-202ENST00000447578 LHFPL2Q6ZUX7 228 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 SLC25A43Q8WUT9 341 aaPredicted RBP5.4□□□□□ -1.54
VPS29-202ENST00000447578 HAS1Q92839 578 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 C16orf92Q96LL3 132 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 ZNF512Q96ME7 567 aaPredicted RBP5.4□□□□□ -1.54
VPS29-202ENST00000447578 ASPSCR1Q9BZE9 553 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 POLR3BQ9NW08 1133 aaPredicted RBP5.4□□□□□ -1.54
VPS29-202ENST00000447578 TRPS1Q9UHF7 1281 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 RIPOR2Q9Y4F9 1068 aa5.4□□□□□ -1.54
VPS29-202ENST00000447578 ATAD2BQ9ULI0 1458 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 PEG3Q9GZU2 1588 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 PTPDC1A2A3K4 754 aa5.39□□□□□ -1.55
VPS29-202ENST00000447578 PLEKHD1A6NEE1 506 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms