RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 AGMOQ6ZNB7 445 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 ABI1Q8IZP0 508 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 SLC39A11Q8N1S5 342 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 RNF149Q8NC42 400 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 FEZF2Q8TBJ5 459 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 PSPC1Q8WXF1 523 aaKnown RBP19.79■□□□□ 0.76
HDDC3-205ENST00000559898 MRPS27Q92552 414 aaKnown RBP19.79■□□□□ 0.76
HDDC3-205ENST00000559898 CPB2Q96IY4 423 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 ZNF558Q96NG5 402 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 MTRQ99707 1265 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 TLE6Q9H808 572 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 GPRC5CQ9NQ84 441 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 CHST12Q9NRB3 414 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 DNAJB4Q9UDY4 337 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 CD207Q9UJ71 328 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 CDH22Q9UJ99 828 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 INPP5FQ9Y2H2 1132 aa19.79■□□□□ 0.76
HDDC3-205ENST00000559898 DKC1O60832 514 aaKnown RBP eCLIP19.78■□□□□ 0.76
HDDC3-205ENST00000559898 OFD1O75665 1012 aa19.78■□□□□ 0.76
HDDC3-205ENST00000559898 LYPLA2O95372 231 aa19.78■□□□□ 0.76
HDDC3-205ENST00000559898 SSTR3P32745 418 aaPredicted RBP19.78■□□□□ 0.76
HDDC3-205ENST00000559898 TECP42680 631 aa19.78■□□□□ 0.76
HDDC3-205ENST00000559898 BCAR1P56945 870 aa19.78■□□□□ 0.76
HDDC3-205ENST00000559898 PLCB3Q01970 1234 aa19.78■□□□□ 0.76
HDDC3-205ENST00000559898 ZNF280BQ86YH2 543 aa19.78■□□□□ 0.76
HDDC3-205ENST00000559898 TRAIPQ9BWF2 469 aa19.78■□□□□ 0.76
HDDC3-205ENST00000559898 EIF2AQ9BY44 585 aaKnown RBP19.78■□□□□ 0.76
HDDC3-205ENST00000559898 NRDE2Q9H7Z3 1164 aa19.78■□□□□ 0.76
HDDC3-205ENST00000559898 POLD4Q9HCU8 107 aa19.78■□□□□ 0.76
HDDC3-205ENST00000559898 DACT1Q9NYF0 836 aa19.78■□□□□ 0.76
HDDC3-205ENST00000559898 HOXA2O43364 376 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 RARRES1P49788 294 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 CDC42EP1Q00587 391 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 UBE3AQ05086 875 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 CAPSQ13938 189 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 SMAD2Q15796 467 aaKnown RBP19.77■□□□□ 0.76
HDDC3-205ENST00000559898 DUSP6Q16828 381 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 LLGL2Q6P1M3 1020 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 FAM43BQ6ZT52 329 aaPredicted RBP19.77■□□□□ 0.76
HDDC3-205ENST00000559898 MAEAQ7L5Y9 396 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 OTUD6AQ7L8S5 288 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 CDR2LQ86X02 465 aaPredicted RBP19.77■□□□□ 0.76
HDDC3-205ENST00000559898 C4orf32Q8N8J7 132 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 SMG8Q8ND04 991 aaKnown RBP19.77■□□□□ 0.76
HDDC3-205ENST00000559898 FBXO18Q8NFZ0 1043 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 AUTS2Q8WXX7 1259 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 TCF25Q9BQ70 676 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 JPH2Q9BR39 696 aaPredicted RBP19.77■□□□□ 0.76
HDDC3-205ENST00000559898 LLPHQ9BRT6 129 aaKnown RBP19.77■□□□□ 0.76
HDDC3-205ENST00000559898 LRFN3Q9BTN0 628 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 APOL5Q9BWW9 433 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 VN1R3Q9BXE9 311 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 RNF39Q9H2S5 420 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 TBC1D13Q9NVG8 400 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 RNF216Q9NWF9 866 aaPredicted RBP19.77■□□□□ 0.76
HDDC3-205ENST00000559898 PCDHB2Q9Y5E7 798 aa19.77■□□□□ 0.76
HDDC3-205ENST00000559898 C19orf67A6NJJ6 358 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 NCK2O43639 380 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 USO1O60763 962 aaKnown RBP19.76■□□□□ 0.75
HDDC3-205ENST00000559898 ZC3H11AO75152 810 aaKnown RBP eCLIP19.76■□□□□ 0.75
HDDC3-205ENST00000559898 DDHD2O94830 711 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 GLRA2P23416 452 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 ARL2P36404 184 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 RBM25P49756 843 aaKnown RBP19.76■□□□□ 0.75
HDDC3-205ENST00000559898 TOB1P50616 345 aaPredicted RBP19.76■□□□□ 0.75
HDDC3-205ENST00000559898 SMAD4Q13485 552 aaKnown RBP19.76■□□□□ 0.75
HDDC3-205ENST00000559898 KCNC3Q14003 757 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 ECM1Q16610 540 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 PUS10Q3MIT2 529 aaKnown RBP19.76■□□□□ 0.75
HDDC3-205ENST00000559898 POTEGQ6S5H5 508 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 SRGAP1Q7Z6B7 1085 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 CATSPER3Q86XQ3 398 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 INO80BQ9C086 356 aaPredicted RBP19.76■□□□□ 0.75
HDDC3-205ENST00000559898 GBP3Q9H0R5 595 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 ENTPD7Q9NQZ7 604 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 SPG21Q9NZD8 308 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 HES2Q9Y543 173 aa19.76■□□□□ 0.75
HDDC3-205ENST00000559898 PI4K2BG5E9Z4 385 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 B4GALT5O43286 388 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 TSPAN1O60635 241 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 ZNF623O75123 536 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 SLC11A1P49279 550 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 PTENP60484 403 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 AMHR2Q16671 573 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 NOMO2Q5JPE7 1267 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 ADHFE1Q8IWW8 467 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 SMRP1Q8NCR6 262 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 ZSCAN31Q96LW9 406 aaPredicted RBP19.75■□□□□ 0.75
HDDC3-205ENST00000559898 POLR3FQ9H1D9 316 aaPredicted RBP19.75■□□□□ 0.75
HDDC3-205ENST00000559898 ANKEF1Q9NU02 776 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 MIOSQ9NXC5 875 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 LZTS1Q9Y250 596 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 USP20Q9Y2K6 914 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 PPME1Q9Y570 386 aa19.75■□□□□ 0.75
HDDC3-205ENST00000559898 TTLL13PA6NNM8 815 aa19.74■□□□□ 0.75
HDDC3-205ENST00000559898 EYA4O95677 639 aa19.74■□□□□ 0.75
HDDC3-205ENST00000559898 MBTD1Q05BQ5 628 aa19.74■□□□□ 0.75
HDDC3-205ENST00000559898 SAFBQ15424 915 aaKnown RBP eCLIP19.74■□□□□ 0.75
HDDC3-205ENST00000559898 TTC38Q5R3I4 469 aa19.74■□□□□ 0.75
HDDC3-205ENST00000559898 MRPL10Q7Z7H8 261 aaKnown RBP19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms