RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 ZNF844Q08AG5 666 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 DHX34Q14147 1143 aaKnown RBP14.61□□□□□ -0.07
SHMT2-222ENST00000555774 PTGISQ16647 500 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 KSR1Q8IVT5 923 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 DAW1Q8N136 415 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 NEUROG2Q9H2A3 272 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 ST6GALNAC4Q9H4F1 302 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 PPP1R9AQ9ULJ8 1098 aa14.61□□□□□ -0.07
SHMT2-222ENST00000555774 TTI1O43156 1089 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 DAPK3O43293 454 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 LYPLA2O95372 231 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 MCCD1P59942 119 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-222ENST00000555774 GRIPAP1Q4V328 841 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 TTC19Q6DKK2 380 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-222ENST00000555774 PHLDB3Q6NSJ2 640 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 SLC30A10Q6XR72 485 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 MIER3Q7Z3K6 550 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 TMC3Q7Z5M5 1100 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 LDHDQ86WU2 507 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 SLC17A8Q8NDX2 589 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 MORC4Q8TE76 937 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 IGSF9BQ9UPX0 1349 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 TCP10L2B9ZVM9 353 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 ERLIN2O94905 339 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 GBP1P32455 592 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 EIF3BP55884 814 aaKnown RBP14.6□□□□□ -0.07
SHMT2-222ENST00000555774 UBXN2AP68543 259 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 GHRHRQ02643 423 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 PTPROQ16827 1216 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 FKBP1CQ5VVH2 108 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 DDX42Q86XP3 938 aaKnown RBP eCLIP14.6□□□□□ -0.07
SHMT2-222ENST00000555774 ARHGEF26Q96DR7 871 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 IWS1Q96ST2 819 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 ZNF70Q9UC06 446 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-222ENST00000555774 SYNGAP1Q96PV0 1343 aa14.6□□□□□ -0.07
SHMT2-222ENST00000555774 YDJCA8MPS7 323 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 GGPS1O95749 300 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 PLS3P13797 630 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 ABCB4P21439 1286 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 VAMP7P51809 220 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 DRG2P55039 364 aaKnown RBP14.59□□□□□ -0.07
SHMT2-222ENST00000555774 GUCY1A3Q02108 690 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 ARHGAP44Q17R89 818 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 EPC2Q52LR7 807 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 DCAF12L1Q5VU92 463 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 YTHDF3Q7Z739 585 aaKnown RBP14.59□□□□□ -0.07
SHMT2-222ENST00000555774 BANK1Q8NDB2 785 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 HOOK2Q96ED9 719 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 THAP2Q9H0W7 228 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 EFCC1Q9HA90 598 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 FOXN3O00409 490 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-222ENST00000555774 PPIP5K2O43314 1243 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 PPFIA2O75334 1257 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 MTA2O94776 668 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 ICAM1P05362 532 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 DR1Q01658 176 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 RSBN1LQ6PCB5 846 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-222ENST00000555774 MCF2L2Q86YR7 1114 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 SAMD3Q8N6K7 520 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 UBL4BQ8N7F7 174 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 UBLCP1Q8WVY7 318 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-222ENST00000555774 RPS6KC1Q96S38 1066 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 RASAL2Q9UJF2 1139 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 EMSYQ7Z589 1322 aa14.59□□□□□ -0.07
SHMT2-222ENST00000555774 CNTNAP1P78357 1384 aa14.58□□□□□ -0.07
SHMT2-222ENST00000555774 MYO1FO00160 1098 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 TULP1O00294 542 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-222ENST00000555774 SPDYE2Q495Y8 402 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 NAA35Q5VZE5 725 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 NLRP14Q86W24 1093 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 XXYLT1Q8NBI6 393 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 FMO2Q99518 471 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 TXLNGYQ9BZA5 131 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 SEPT11Q9NVA2 429 aaKnown RBP14.58□□□□□ -0.08
SHMT2-222ENST00000555774 PSME4Q14997 1843 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 KIAA0754O94854 1291 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 FAM107AO95990 144 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 ITGB5P18084 799 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 PTGER2P43116 358 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 GPC5P78333 572 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 GTF2BQ00403 316 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 DLGAP5Q15398 846 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 DUPD1Q68J44 220 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 ATP8B4Q8TF62 1192 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 ZNF473Q8WTR7 871 aaKnown RBP14.58□□□□□ -0.08
SHMT2-222ENST00000555774 RUNDC3BQ96NL0 473 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 ERP44Q9BS26 406 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 UBE2TQ9NPD8 197 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-222ENST00000555774 MAP3K20Q9NYL2 800 aaKnown RBP14.58□□□□□ -0.08
SHMT2-222ENST00000555774 TAS2R14Q9NYV8 317 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 COG5Q9UP83 839 aa14.58□□□□□ -0.08
SHMT2-222ENST00000555774 RTN2O75298 545 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 PAEPP09466 180 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 GZMAP12544 262 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 VCAM1P19320 739 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 INPP5BP32019 993 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 CHRNA3P32297 505 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 RARRES1P49788 294 aa14.57□□□□□ -0.08
SHMT2-222ENST00000555774 DHX9Q08211 1270 aaKnown RBP14.57□□□□□ -0.08
SHMT2-222ENST00000555774 SKIDA1Q1XH10 827 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms