RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 ERCC4Q92889 916 aaPredicted RBP12.8□□□□□ -0.36
YBX3-213ENST00000542641 SMARCE1Q969G3 411 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 CCDC47Q96A33 483 aaKnown RBP12.8□□□□□ -0.36
YBX3-213ENST00000542641 OSMRQ99650 979 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 NTPCRQ9BSD7 190 aaKnown RBP12.8□□□□□ -0.36
YBX3-213ENST00000542641 GCOM2Q9BZD3 368 aaPredicted RBP12.8□□□□□ -0.36
YBX3-213ENST00000542641 MRPL44Q9H9J2 332 aaKnown RBP12.8□□□□□ -0.36
YBX3-213ENST00000542641 EXOC1Q9NV70 894 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 UMODL1Q5DID0 1318 aa12.8□□□□□ -0.36
YBX3-213ENST00000542641 SLC16A4O15374 487 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 KLRC4O43908 158 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 CSDE1O75534 798 aaKnown RBP12.79□□□□□ -0.36
YBX3-213ENST00000542641 DARSP14868 501 aaKnown RBP12.79□□□□□ -0.36
YBX3-213ENST00000542641 EIF4BP23588 611 aaKnown RBP12.79□□□□□ -0.36
YBX3-213ENST00000542641 TIE1P35590 1138 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 PTENP60484 403 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 COASYQ13057 564 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 KLHL40Q2TBA0 621 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 KMT5BQ4FZB7 885 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 TRAF7Q6Q0C0 670 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 SRGAP1Q7Z6B7 1085 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 ZBTB8OSQ8IWT0 167 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 KIFC3Q9BVG8 833 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 NFKBIZQ9BYH8 718 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 INO80BQ9C086 356 aaPredicted RBP12.79□□□□□ -0.36
YBX3-213ENST00000542641 C2orf40Q9H1Z8 148 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 IFT122Q9HBG6 1241 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 TBC1D7Q9P0N9 293 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 PCDHA5Q9Y5H7 936 aa12.79□□□□□ -0.36
YBX3-213ENST00000542641 EVPLQ92817 2033 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 H0YCG3 227 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 INO80B-WBP1J3KQ70 363 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 K7ENM7 598 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 PARNO95453 639 aaKnown RBP12.78□□□□□ -0.36
YBX3-213ENST00000542641 GHRP10912 638 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 ITGB8P26012 769 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 NMT1P30419 496 aaKnown RBP12.78□□□□□ -0.36
YBX3-213ENST00000542641 PSEN1P49768 467 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 EFNA5P52803 228 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 NCKAP1LP55160 1127 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 PSMD2Q13200 908 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 KCNB1Q14721 858 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 FBXO47Q5MNV8 452 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 CCDC183Q5T5S1 534 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 CDCA2Q69YH5 1023 aaPredicted RBP12.78□□□□□ -0.36
YBX3-213ENST00000542641 MFSD5Q6N075 450 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 HAUS6Q7Z4H7 955 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 USP38Q8NB14 1042 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 SLC17A8Q8NDX2 589 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 TMEM40Q8WWA1 233 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 HPS3Q969F9 1004 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 SYAP1Q96A49 352 aaPredicted RBP12.78□□□□□ -0.36
YBX3-213ENST00000542641 SCLYQ96I15 445 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 GSDMAQ96QA5 445 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 WNT8AQ9H1J5 351 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 OLFML3Q9NRN5 406 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 RMND1Q9NWS8 449 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 NR2E3Q9Y5X4 410 aa12.78□□□□□ -0.36
YBX3-213ENST00000542641 DENND3A2RUS2 1198 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 K7ERI5 159 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 RPS6KA5O75582 802 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 RHOBTB3O94955 611 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 GCNT3O95395 438 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 MAPTP10636 758 aaKnown RBP12.77□□□□□ -0.37
YBX3-213ENST00000542641 SYN1P17600 705 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 SCP2P22307 547 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 SARSP49591 514 aaKnown RBP12.77□□□□□ -0.37
YBX3-213ENST00000542641 EHHADHQ08426 723 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 LPIN1Q14693 890 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 MBTPS1Q14703 1052 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 FAM26FQ5R3K3 315 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 CAVIN1Q6NZI2 390 aaKnown RBP12.77□□□□□ -0.37
YBX3-213ENST00000542641 TSHZ1Q6ZSZ6 1077 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 ZNF720Q7Z2F6 126 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 TMEM199Q8N511 208 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 TMEM161BQ8NDZ6 487 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 SPATA20Q8TB22 786 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 DCBLD2Q96PD2 775 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 FIZ1Q96SL8 496 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 MINDY3Q9H8M7 445 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 SLC39A2Q9NP94 309 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 KIAA1468Q9P260 1216 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 ARHGAP28Q9P2N2 729 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 ZMYND8Q9ULU4 1186 aaPredicted RBP12.77□□□□□ -0.37
YBX3-213ENST00000542641 NOC2LQ9Y3T9 749 aaKnown RBP12.77□□□□□ -0.37
YBX3-213ENST00000542641 SQORQ9Y6N5 450 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 ADGRA3Q8IWK6 1321 aa12.77□□□□□ -0.37
YBX3-213ENST00000542641 GPR182O15218 404 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 NBNO60934 754 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 FGFR4P22455 802 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 SFPQP23246 707 aaKnown RBP eCLIP12.76□□□□□ -0.37
YBX3-213ENST00000542641 CD52P31358 61 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 ABCD1P33897 745 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 RFC2P35250 354 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 RGS19P49795 217 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 GTF2BQ00403 316 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 MBTD1Q05BQ5 628 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 NCBP1Q09161 790 aaKnown RBP12.76□□□□□ -0.37
YBX3-213ENST00000542641 NFX1Q12986 1120 aaKnown RBP12.76□□□□□ -0.37
YBX3-213ENST00000542641 STRN3Q13033 797 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms