RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 PCDHA7Q9UN72 937 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.37□□□□□ -1.07
USP4-211ENST00000485450 ADGRG1Q9Y653 693 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 MICAL3Q7RTP6 2002 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 COL1A2P08123 1366 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 COL4A4P53420 1690 aaPredicted RBP8.37□□□□□ -1.07
USP4-211ENST00000485450 ITGB5P18084 799 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 CELF3Q5SZQ8 465 aaKnown RBP8.37□□□□□ -1.07
USP4-211ENST00000485450 CYB5D1Q6P9G0 228 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 C17orf50Q8WW18 174 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 PSTPIP2Q9H939 334 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 LZTFL1Q9NQ48 299 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 SEC63Q9UGP8 760 aaKnown RBP8.37□□□□□ -1.07
USP4-211ENST00000485450 VAV3Q9UKW4 847 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 TPX2Q9ULW0 747 aaKnown RBP8.37□□□□□ -1.07
USP4-211ENST00000485450 MYO6Q9UM54 1294 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 V9GY48 417 aaPredicted RBP8.37□□□□□ -1.07
USP4-211ENST00000485450 MYH9P35579 1960 aaKnown RBP8.37□□□□□ -1.07
USP4-211ENST00000485450 PSMD10O75832 226 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 CABYRO75952 493 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 ARIH2O95376 493 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 DEUP1Q05D60 604 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 PABPC1LQ4VXU2 614 aaKnown RBP8.37□□□□□ -1.07
USP4-211ENST00000485450 FAM26DQ5JW98 314 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 ZNF569Q5MCW4 686 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 KRT25Q7Z3Z0 450 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 NEK9Q8TD19 979 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 RSRC1Q96IZ7 334 aaKnown RBP8.37□□□□□ -1.07
USP4-211ENST00000485450 CDHR1Q96JP9 859 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 DHRS1Q96LJ7 313 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 TCEANC2Q96MN5 208 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 NAPGQ99747 312 aaPredicted RBP8.37□□□□□ -1.07
USP4-211ENST00000485450 RABEP2Q9H5N1 569 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 ACTR5Q9H9F9 607 aaPredicted RBP8.37□□□□□ -1.07
USP4-211ENST00000485450 PIDD1Q9HB75 910 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 AGO4Q9HCK5 861 aaKnown RBP8.37□□□□□ -1.07
USP4-211ENST00000485450 FAM184BQ9ULE4 1060 aa8.37□□□□□ -1.07
USP4-211ENST00000485450 A0A1B0GVL5 298 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 TMEM221A6NGB7 291 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 F8VZ95 297 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 PDLIM1O00151 329 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 OPA1O60313 960 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 FARP2O94887 1054 aaPredicted RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 F2P00734 622 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 NR3C2P08235 984 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 RPSAP08865 295 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 EPB41P11171 864 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 GBP2P32456 591 aaPredicted RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 SPECC1LQ69YQ0 1117 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 CCDC174Q6PII3 467 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 BLIDQ8IZY5 108 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 FUKQ8N0W3 1084 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 STK11IPQ8N1F8 1099 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 ZNF570Q96NI8 536 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 PANX2Q96RD6 677 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 MPHOSPH6Q99547 160 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 RIT2Q99578 217 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 NUP58Q9BVL2 599 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 ANO3Q9BYT9 981 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 UBE2OQ9C0C9 1292 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 UNC93B1Q9H1C4 597 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 NCOA5Q9HCD5 579 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 PRKAR2AP13861 404 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 ADKP55263 362 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 MCCD1P59942 119 aaPredicted RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 AMPD2Q01433 879 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 SP2Q02086 613 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 IFFO1Q0D2I5 559 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 STK3Q13188 491 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 STXBP2Q15833 593 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 PDILTQ8N807 584 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 NAA15Q9BXJ9 866 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 IQCGQ9H095 443 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 CENPHQ9H3R5 247 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 C6orf50Q9HD87 102 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 PCMTD2Q9NV79 361 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 SPATA7Q9P0W8 599 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 TUBE1Q9UJT0 475 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 TSKSQ9UJT2 592 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 CORO1CQ9ULV4 474 aaPredicted RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 FAM237AA0A1B0GTK4 181 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 LAD1O00515 517 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 PES1O00541 588 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 TFRCP02786 760 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 ALAS1P13196 640 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 ROR2Q01974 943 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 MTF1Q14872 753 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 TRIM71Q2Q1W2 868 aaKnown RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 TRAF7Q6Q0C0 670 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 PLPPR4Q7Z2D5 763 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 SLC35F6Q8N357 371 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 SCFD2Q8WU76 684 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 GORASP1Q9BQQ3 440 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 SELENOOQ9BVL4 669 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 HMX1Q9NP08 348 aaPredicted RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 WDR70Q9NW82 654 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 MYO1AQ9UBC5 1043 aa8.36□□□□□ -1.07
USP4-211ENST00000485450 MAFBQ9Y5Q3 323 aaPredicted RBP8.36□□□□□ -1.07
USP4-211ENST00000485450 GOLGA6L7A0A1B0GV03 622 aa8.35□□□□□ -1.07
USP4-211ENST00000485450 MBLAC1A4D2B0 266 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms