RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 CPA6Q8N4T0 437 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 KIAA1958Q8N8K9 716 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 RNF217Q8TC41 542 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 CCT6BQ92526 530 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 PMEPA1Q969W9 287 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 BORCS6Q96GS4 357 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 FUBP3Q96I24 572 aaKnown RBP eCLIP5.12□□□□□ -1.59
SF3B1-202ENST00000409915 TBATAQ96M53 351 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 TM9SF2Q99805 663 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 PTPN18Q99952 460 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 CENPOQ9BU64 300 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 NAA15Q9BXJ9 866 aaKnown RBP5.12□□□□□ -1.59
SF3B1-202ENST00000409915 EHMT1Q9H9B1 1298 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 LIN7BQ9HAP6 207 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 CRTAC1Q9NQ79 661 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 ARHGEF4Q9NR80 690 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 PICK1Q9NRD5 415 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 ATP8A2Q9NTI2 1148 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 RNF186Q9NXI6 227 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 ABI2Q9NYB9 513 aaPredicted RBP5.12□□□□□ -1.59
SF3B1-202ENST00000409915 TNPO3Q9Y5L0 923 aaKnown RBP5.12□□□□□ -1.59
SF3B1-202ENST00000409915 HRH3Q9Y5N1 445 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 CCDC171Q6TFL3 1326 aa5.12□□□□□ -1.59
SF3B1-202ENST00000409915 LAMB1P07942 1786 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 ATAD5Q96QE3 1844 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 MANSC4A6NHS7 340 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-202ENST00000409915 BTBD19C9JJ37 291 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 AGRPO00253 132 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 CTIFO43310 598 aaKnown RBP5.11□□□□□ -1.59
SF3B1-202ENST00000409915 OPA1O60313 960 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 PPFIA3O75145 1194 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 TBC1D8O95759 1140 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 ADH1AP07327 375 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 EDN3P14138 238 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 AKR1B1P15121 316 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 BPIP17213 487 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 GNAT2P19087 354 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 GUCY1A2P33402 732 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 CDK8P49336 464 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 GTF2A1P52655 376 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-202ENST00000409915 HMGCS2P54868 508 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 HAND2P61296 217 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 ZBED6P86452 979 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 PTSQ03393 145 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 PPATQ06203 517 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 PPARAQ07869 468 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 SREBF2Q12772 1141 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 SPP2Q13103 211 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 SNAPC2Q13487 334 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 MOGSQ13724 837 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 ZNF460Q14592 562 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 SEPT2Q15019 361 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 RAB3GAP1Q15042 981 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 TAF11Q15544 211 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 TUBB8Q3ZCM7 444 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 CERKLQ49MI3 558 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-202ENST00000409915 MCMDC2Q4G0Z9 681 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 TMEM240Q5SV17 173 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 IER5Q5VY09 327 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 TATDN1Q6P1N9 297 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 GADL1Q6ZQY3 521 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 CLEC17AQ6ZS10 378 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 C1orf122Q6ZSJ8 110 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 FOXP4Q8IVH2 680 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-202ENST00000409915 CBARPQ8N350 705 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-202ENST00000409915 CHCHD4Q8N4Q1 142 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 ACER1Q8TDN7 264 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 SLC13A1Q9BZW2 595 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 NAPBQ9H115 298 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 ZFYVE1Q9HBF4 777 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 TRIM39Q9HCM9 518 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 INCENPQ9NQS7 918 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 HELLSQ9NRZ9 838 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 CHMP5Q9NZZ3 219 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 KANSL3Q9P2N6 904 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 ARPP21Q9UBL0 812 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-202ENST00000409915 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.11□□□□□ -1.59
SF3B1-202ENST00000409915 PCDHB10Q9UN67 800 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 KCNH4Q9UQ05 1017 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 AFG3L2Q9Y4W6 797 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 SLC12A7Q9Y666 1083 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 TACC3Q9Y6A5 838 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 SLC4A7Q9Y6M7 1214 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 ROBO3Q96MS0 1386 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 PHIPQ8WWQ0 1821 aa5.11□□□□□ -1.59
SF3B1-202ENST00000409915 A0A0G2JLL6 359 aaPredicted RBP5.1□□□□□ -1.59
SF3B1-202ENST00000409915 ZEB2O60315 1214 aa5.1□□□□□ -1.59
SF3B1-202ENST00000409915 REC8O95072 547 aa5.1□□□□□ -1.59
SF3B1-202ENST00000409915 ASNSP08243 561 aa5.1□□□□□ -1.59
SF3B1-202ENST00000409915 CYP2C8P10632 490 aa5.1□□□□□ -1.59
SF3B1-202ENST00000409915 HSPD1P10809 573 aaKnown RBP5.1□□□□□ -1.59
SF3B1-202ENST00000409915 CETPP11597 493 aa5.1□□□□□ -1.59
SF3B1-202ENST00000409915 ZKSCAN1P17029 563 aaPredicted RBP5.1□□□□□ -1.59
SF3B1-202ENST00000409915 CHMLP26374 656 aa5.1□□□□□ -1.59
SF3B1-202ENST00000409915 HTTP42858 3142 aa5.1□□□□□ -1.59
SF3B1-202ENST00000409915 RECQLP46063 649 aaPredicted RBP5.1□□□□□ -1.59
SF3B1-202ENST00000409915 NEDD4P46934 1319 aa5.1□□□□□ -1.59
SF3B1-202ENST00000409915 TM4SF4P48230 202 aa5.1□□□□□ -1.59
SF3B1-202ENST00000409915 RXRGP48443 463 aa5.1□□□□□ -1.59
SF3B1-202ENST00000409915 CTCFP49711 727 aaPredicted RBP5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms