RNA–Protein interactions for RNA: YBR160W

CDC28, Transcript of Cyclin-dependent kinase (CDK) catalytic subunit, yeast

Gene CDC28, Length 897 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC28	YBR160W	YPL245W	Q12179	454 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	YOL114C	Q12322	202 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	UBR1	P19812	1950 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	REP2	P03872	296 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	ARG80	P07249	177 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	PEP4	P07267	405 aa	Known RBP	4.57	□□□□□ -1.68
CDC28	YBR160W	PET494	P07390	489 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC28	YBR160W	MET2	P08465	486 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	MET3	P08536	511 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	MER1	P16523	270 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	HOP1	P20050	605 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	CKS1	P20486	150 aa	Known RBP	4.57	□□□□□ -1.68
CDC28	YBR160W	UTR1	P21373	530 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	DAL81	P21657	970 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	KIN3	P22209	435 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	MNE1	P24720	663 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	AHC2	P25649	128 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	YIM1	P28625	365 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	YPT7	P32939	208 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	PMT1	P33775	817 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	DRE2	P36152	348 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	MRPL40	P36534	297 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	MOH1	P38191	138 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	YHR035W	P38769	630 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	YER184C	P39961	794 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	HPA3	P39979	161 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	YMR144W	P40214	342 aa	Known RBP	4.57	□□□□□ -1.68
CDC28	YBR160W	LAS21	P40367	830 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	TIR3	P40552	269 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	PHB1	P40961	287 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	PSA1	P41940	361 aa	Known RBP	4.57	□□□□□ -1.68
CDC28	YBR160W	RPE1	P46969	238 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	VPS25	P47142	202 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	ASK10	P48361	1146 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	RPS12	P48589	143 aa	Known RBP	4.57	□□□□□ -1.68
CDC28	YBR160W	HHO1	P53551	258 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	COS1	P53822	381 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	YNL140C	P53910	189 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	OAZ1	Q02803	292 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	NRG1	Q03125	231 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	SSK1	Q07084	712 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	FRE5	Q08908	694 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	TGL5	Q12043	749 aa		4.57	□□□□□ -1.68
CDC28	YBR160W	TDH1	P00360	332 aa	Known RBP	4.56	□□□□□ -1.68
CDC28	YBR160W	COX3	P00420	269 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	PET9	P18239	318 aa	Known RBP	4.56	□□□□□ -1.68
CDC28	YBR160W	PMT2	P31382	759 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	ACB1	P31787	87 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	VPH1	P32563	840 aa	Known RBP	4.56	□□□□□ -1.68
CDC28	YBR160W	TMA19	P35691	167 aa	Known RBP	4.56	□□□□□ -1.68
CDC28	YBR160W	SOL2	P37262	315 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	ASC1	P38011	319 aa	Known RBP	4.56	□□□□□ -1.68
CDC28	YBR160W	SIF2	P38262	535 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	SDH8	P38345	138 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	FMP52	P40008	231 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	GID8	P40208	455 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	PKP1	P40530	394 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	SNM1	P40993	198 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	PYK2	P52489	506 aa	Known RBP	4.56	□□□□□ -1.68
CDC28	YBR160W	MDM34	P53083	459 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	YNL260C	P53846	198 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	TIM44	Q01852	431 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	RSM28	Q03430	361 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	RIM13	Q03792	727 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	LEA1	Q08963	238 aa	Predicted RBP	4.56	□□□□□ -1.68
CDC28	YBR160W	PST1	Q12355	444 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	APC2	Q12440	853 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	PEX11	Q12462	236 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	YOR338W	Q99326	363 aa		4.56	□□□□□ -1.68
CDC28	YBR160W	MSF1	P08425	469 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	STE12	P13574	688 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	ERD2	P18414	219 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	PRP28	P23394	588 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	IMG2	P25642	146 aa	Predicted RBP	4.55	□□□□□ -1.68
CDC28	YBR160W	SSH4	P32343	579 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	HXT4	P32467	576 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	SFC1	P33303	322 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	LHP1	P33399	275 aa	Known RBP	4.55	□□□□□ -1.68
CDC28	YBR160W	PRP18	P33411	251 aa	Predicted RBP	4.55	□□□□□ -1.68
CDC28	YBR160W	WBP1	P33767	430 aa	Known RBP	4.55	□□□□□ -1.68
CDC28	YBR160W	COS8	P38723	381 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	LRP1	P38801	184 aa	Known RBP	4.55	□□□□□ -1.68
CDC28	YBR160W	QRI7	P43122	407 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	BNA6	P43619	295 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	YJR149W	P47177	404 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	AMA1	P50082	593 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	COS10	P52924	374 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	ROG1	P53118	685 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	MPS2	P53159	387 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	JAC1	P53193	184 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	YGR015C	P53208	328 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	FMP48	P53233	369 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	MNT4	P53745	580 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	TPS1	Q00764	495 aa	Known RBP	4.55	□□□□□ -1.68
CDC28	YBR160W	AAT1	Q01802	451 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	PLM2	Q04383	521 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	ELP6	Q04868	273 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	RNH202	Q05635	350 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	VID22	Q05934	901 aa		4.55	□□□□□ -1.68
CDC28	YBR160W	IPK1	Q06667	281 aa		4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 72.1 ms