RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 TFDP1Q14186 410 aa24.01■■□□□ 1.43
SNX1-206ENST00000559389 RNF149Q8NC42 400 aa24.01■■□□□ 1.43
SNX1-206ENST00000559389 AGO3Q9H9G7 860 aaKnown RBP24.01■■□□□ 1.43
SNX1-206ENST00000559389 IFT122Q9HBG6 1241 aa24.01■■□□□ 1.43
SNX1-206ENST00000559389 TNRC18O15417 2968 aaPredicted RBP24■■□□□ 1.43
SNX1-206ENST00000559389 MYMKA6NI61 221 aa24■■□□□ 1.43
SNX1-206ENST00000559389 GADD45BO75293 160 aaPredicted RBP24■■□□□ 1.43
SNX1-206ENST00000559389 SLFN14P0C7P3 912 aa24■■□□□ 1.43
SNX1-206ENST00000559389 NAMPTP43490 491 aa24■■□□□ 1.43
SNX1-206ENST00000559389 CACNB1Q02641 598 aaPredicted RBP24■■□□□ 1.43
SNX1-206ENST00000559389 POU5F1BQ06416 359 aa24■■□□□ 1.43
SNX1-206ENST00000559389 GIT2Q14161 759 aa24■■□□□ 1.43
SNX1-206ENST00000559389 PPP2R5AQ15172 486 aa24■■□□□ 1.43
SNX1-206ENST00000559389 PLEKHG4Q58EX7 1191 aa24■■□□□ 1.43
SNX1-206ENST00000559389 IFNLR1Q8IU57 520 aaPredicted RBP24■■□□□ 1.43
SNX1-206ENST00000559389 RPUSD2Q8IZ73 545 aaKnown RBP24■■□□□ 1.43
SNX1-206ENST00000559389 GCOM2Q9BZD3 368 aaPredicted RBP24■■□□□ 1.43
SNX1-206ENST00000559389 POLD4Q9HCU8 107 aa24■■□□□ 1.43
SNX1-206ENST00000559389 SERTAD1Q9UHV2 236 aa24■■□□□ 1.43
SNX1-206ENST00000559389 NOC2LQ9Y3T9 749 aaKnown RBP24■■□□□ 1.43
SNX1-206ENST00000559389 PDE4DIPQ5VU43 2346 aa23.99■■□□□ 1.43
SNX1-206ENST00000559389 KRT18P05783 430 aaKnown RBP23.99■■□□□ 1.43
SNX1-206ENST00000559389 SRGAP2CP0DJJ0 459 aa23.99■■□□□ 1.43
SNX1-206ENST00000559389 ACRP10323 421 aa23.99■■□□□ 1.43
SNX1-206ENST00000559389 EIF4BP23588 611 aaKnown RBP23.99■■□□□ 1.43
SNX1-206ENST00000559389 PHKA2P46019 1235 aa23.99■■□□□ 1.43
SNX1-206ENST00000559389 PSRC1Q6PGN9 363 aaPredicted RBP23.99■■□□□ 1.43
SNX1-206ENST00000559389 C16orf59Q7L2K0 433 aa23.99■■□□□ 1.43
SNX1-206ENST00000559389 FAM228AQ86W67 206 aa23.99■■□□□ 1.43
SNX1-206ENST00000559389 CEP57L1Q8IYX8 460 aa23.99■■□□□ 1.43
SNX1-206ENST00000559389 DDX12PQ92771 950 aa23.99■■□□□ 1.43
SNX1-206ENST00000559389 NFKBIZQ9BYH8 718 aa23.99■■□□□ 1.43
SNX1-206ENST00000559389 IFIH1Q9BYX4 1025 aaKnown RBP23.99■■□□□ 1.43
SNX1-206ENST00000559389 C17orf75Q9HAS0 396 aa23.99■■□□□ 1.43
SNX1-206ENST00000559389 ERVK-5Q9HDB9 667 aa23.99■■□□□ 1.43
SNX1-206ENST00000559389 LRRIQ4A6NIV6 560 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 CD52P31358 61 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 ZNF131P52739 623 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 PTENP60484 403 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 UBE2HP62256 183 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 FAM160A1Q05DH4 1040 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 TCTN1Q2MV58 587 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 LONRF3Q496Y0 759 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 CDCA2Q69YH5 1023 aaPredicted RBP23.98■■□□□ 1.43
SNX1-206ENST00000559389 CNKSR3Q6P9H4 555 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 SRGAP1Q7Z6B7 1085 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 FMR1NBQ8N0W7 255 aaPredicted RBP23.98■■□□□ 1.43
SNX1-206ENST00000559389 STAMQ92783 540 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 DNAJC19Q96DA6 116 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 IFT74Q96LB3 600 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 TRIM9Q9C026 710 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 LRRC27Q9C0I9 530 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 TET1Q8NFU7 2136 aa23.98■■□□□ 1.43
SNX1-206ENST00000559389 TBCAO75347 108 aaKnown RBP23.97■■□□□ 1.43
SNX1-206ENST00000559389 RPS6KA5O75582 802 aa23.97■■□□□ 1.43
SNX1-206ENST00000559389 ZNF202O95125 648 aa23.97■■□□□ 1.43
SNX1-206ENST00000559389 PLS3P13797 630 aa23.97■■□□□ 1.43
SNX1-206ENST00000559389 MYH11P35749 1972 aa23.97■■□□□ 1.43
SNX1-206ENST00000559389 PAK2Q13177 524 aa23.97■■□□□ 1.43
SNX1-206ENST00000559389 DMP1Q13316 513 aaPredicted RBP23.97■■□□□ 1.43
SNX1-206ENST00000559389 CNNM4Q6P4Q7 775 aa23.97■■□□□ 1.43
SNX1-206ENST00000559389 DYMQ7RTS9 669 aa23.97■■□□□ 1.43
SNX1-206ENST00000559389 ADGRA3Q8IWK6 1321 aa23.97■■□□□ 1.43
SNX1-206ENST00000559389 ENGASEQ8NFI3 743 aa23.97■■□□□ 1.43
SNX1-206ENST00000559389 DBF4BQ8NFT6 615 aa23.97■■□□□ 1.43
SNX1-206ENST00000559389 SEPT8Q92599 483 aa23.97■■□□□ 1.43
SNX1-206ENST00000559389 APBB2Q92870 758 aa23.97■■□□□ 1.43
SNX1-206ENST00000559389 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.97■■□□□ 1.432e-9■■□□□ 12.4
SNX1-206ENST00000559389 PRPF40AO75400 957 aaKnown RBP23.96■■□□□ 1.43
SNX1-206ENST00000559389 FAM13AO94988 1023 aa23.96■■□□□ 1.43
SNX1-206ENST00000559389 BMP8BP34820 402 aa23.96■■□□□ 1.43
SNX1-206ENST00000559389 PEX3P56589 373 aa23.96■■□□□ 1.43
SNX1-206ENST00000559389 AMPD3Q01432 767 aa23.96■■□□□ 1.43
SNX1-206ENST00000559389 TMEM240Q5SV17 173 aa23.96■■□□□ 1.43
SNX1-206ENST00000559389 ODR4Q5SWX8 454 aa23.96■■□□□ 1.43
SNX1-206ENST00000559389 KRBA2Q6ZNG9 492 aa23.96■■□□□ 1.43
SNX1-206ENST00000559389 ZNF365Q70YC5 407 aa23.96■■□□□ 1.43
SNX1-206ENST00000559389 DEPTORQ8TB45 409 aa23.96■■□□□ 1.43
SNX1-206ENST00000559389 KIFC3Q9BVG8 833 aa23.96■■□□□ 1.43
SNX1-206ENST00000559389 INO80BQ9C086 356 aaPredicted RBP23.96■■□□□ 1.43
SNX1-206ENST00000559389 MINDY3Q9H8M7 445 aa23.96■■□□□ 1.43
SNX1-206ENST00000559389 LARSQ9P2J5 1176 aaKnown RBP23.96■■□□□ 1.43
SNX1-206ENST00000559389 PADI3Q9ULW8 664 aa23.96■■□□□ 1.43
SNX1-206ENST00000559389 SFI1A8K8P3 1242 aa23.95■■□□□ 1.42
SNX1-206ENST00000559389 GPR182O15218 404 aa23.95■■□□□ 1.42
SNX1-206ENST00000559389 CSDE1O75534 798 aaKnown RBP23.95■■□□□ 1.42
SNX1-206ENST00000559389 LIG1P18858 919 aa23.95■■□□□ 1.42
SNX1-206ENST00000559389 SFPQP23246 707 aaKnown RBP eCLIP23.95■■□□□ 1.42
SNX1-206ENST00000559389 NPTX2P47972 431 aa23.95■■□□□ 1.42
SNX1-206ENST00000559389 MBTD1Q05BQ5 628 aa23.95■■□□□ 1.42
SNX1-206ENST00000559389 SNW1Q13573 536 aaKnown RBP23.95■■□□□ 1.42
SNX1-206ENST00000559389 PRPF38BQ5VTL8 546 aaKnown RBP23.95■■□□□ 1.42
SNX1-206ENST00000559389 ZBTB8OSQ8IWT0 167 aa23.95■■□□□ 1.42
SNX1-206ENST00000559389 GRAMD1CQ8IYS0 662 aa23.95■■□□□ 1.42
SNX1-206ENST00000559389 SPIRE2Q8WWL2 714 aa23.95■■□□□ 1.42
SNX1-206ENST00000559389 C7orf25Q9BPX7 421 aa23.95■■□□□ 1.42
SNX1-206ENST00000559389 UBE2OQ9C0C9 1292 aaKnown RBP23.95■■□□□ 1.42
SNX1-206ENST00000559389 C2orf40Q9H1Z8 148 aa23.95■■□□□ 1.42
SNX1-206ENST00000559389 PRO3102Q9H379 93 aa23.95■■□□□ 1.42
SNX1-206ENST00000559389 PARVGQ9HBI0 331 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms