RNA–Protein interactions for RNA: ENST00000488920.2

CCHCR1-215, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 3

Gene CCHCR1, Length 715 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-215ENST00000488920 PRPF31Q8WWY3 499 aaKnown RBP13.36□□□□□ -0.27
CCHCR1-215ENST00000488920 SLC7A3Q8WY07 619 aa13.36□□□□□ -0.27
CCHCR1-215ENST00000488920 JPH2Q9BR39 696 aaPredicted RBP13.36□□□□□ -0.27
CCHCR1-215ENST00000488920 LXNQ9BS40 222 aa13.36□□□□□ -0.27
CCHCR1-215ENST00000488920 EPHX3Q9H6B9 360 aa13.36□□□□□ -0.27
CCHCR1-215ENST00000488920 BMP2KQ9NSY1 1161 aaPredicted RBP13.36□□□□□ -0.27
CCHCR1-215ENST00000488920 PCDHA12Q9UN75 941 aa13.36□□□□□ -0.27
CCHCR1-215ENST00000488920 MYH9P35579 1960 aaKnown RBP13.36□□□□□ -0.27
CCHCR1-215ENST00000488920 BDP1A6H8Y1 2624 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 HOXA2O43364 376 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 SLITRK3O94933 977 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 SRGAP2CP0DJJ0 459 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 ATP2B1P20020 1258 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 TXKP42681 527 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 NRIP1P48552 1158 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 POLGP54098 1239 aaPredicted RBP13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 ADAM15Q13444 863 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 LONRF3Q496Y0 759 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 XKR9Q5GH70 373 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 CLLU1OSQ5K130 101 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 OTUD6AQ7L8S5 288 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 ZNF598Q86UK7 904 aaKnown RBP13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 ZNF410Q86VK4 478 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 KHSRPQ92945 711 aaKnown RBP eCLIP13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 EIF2AK1Q9BQI3 630 aaKnown RBP13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 INO80BQ9C086 356 aaPredicted RBP13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 DHX33Q9H6R0 707 aaKnown RBP13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 ZSWIM4Q9H7M6 989 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 TTC12Q9H892 705 aaPredicted RBP13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 CHST12Q9NRB3 414 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 DACT1Q9NYF0 836 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 LOXHD1Q8IVV2 1947 aa13.35□□□□□ -0.27
CCHCR1-215ENST00000488920 MYO7AQ13402 2215 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 PER2O15055 1255 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 NEMFO60524 1076 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 EOMESO95936 686 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 ATF7P17544 494 aaPredicted RBP13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 LAG3P18627 525 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 SFPQP23246 707 aaKnown RBP eCLIP13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 SSTR3P32745 418 aaPredicted RBP13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 PBX3P40426 434 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 RFC5P40937 340 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 ERVFC1P60507 584 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 UBE3AQ05086 875 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 LAMTOR4Q0VGL1 99 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 TWF2Q6IBS0 349 aaKnown RBP13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 CATSPER4Q7RTX7 472 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 EXOC8Q8IYI6 725 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 GJD3Q8N144 294 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 HELQQ8TDG4 1101 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 PSPC1Q8WXF1 523 aaKnown RBP13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 PPP2R3CQ969Q6 453 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 MTMR9Q96QG7 549 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 KIF2CQ99661 725 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 HSD17B14Q9BPX1 270 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 TLE6Q9H808 572 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 IFT122Q9HBG6 1241 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 PIN4Q9Y237 131 aaKnown RBP13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 COL4A3BPQ9Y5P4 624 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 BRWD1Q9NSI6 2320 aa13.34□□□□□ -0.27
CCHCR1-215ENST00000488920 RALGAPA2Q2PPJ7 1873 aa13.33□□□□□ -0.27
CCHCR1-215ENST00000488920 A0A087WWV3 80 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 TBX10O75333 385 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 MCM7P33993 719 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 PHKA2P46019 1235 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 NDUFV1P49821 464 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 EMC2Q15006 297 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 SAFBQ15424 915 aaKnown RBP eCLIP13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 CSPP1Q1MSJ5 1256 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 C8orf34Q49A92 452 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 KCNT2Q6UVM3 1135 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 LRRC43Q8N309 656 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 EFHBQ8N7U6 833 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 LPPQ93052 612 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 C8orf76Q96K31 380 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 ZNF558Q96NG5 402 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 TMEM60Q9H2L4 133 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 MINDY3Q9H8M7 445 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 TLR9Q9NR96 1032 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 FAM50BQ9Y247 325 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 PPME1Q9Y570 386 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 NLRC5Q86WI3 1866 aa13.33□□□□□ -0.28
CCHCR1-215ENST00000488920 PLCB3Q01970 1234 aa13.32□□□□□ -0.28
CCHCR1-215ENST00000488920 TCP11Q8WWU5 503 aa13.32□□□□□ -0.28
CCHCR1-215ENST00000488920 MRPS27Q92552 414 aaKnown RBP13.32□□□□□ -0.28
CCHCR1-215ENST00000488920 ZSCAN31Q96LW9 406 aaPredicted RBP13.32□□□□□ -0.28
CCHCR1-215ENST00000488920 LLPHQ9BRT6 129 aaKnown RBP13.32□□□□□ -0.28
CCHCR1-215ENST00000488920 TRAIPQ9BWF2 469 aa13.32□□□□□ -0.28
CCHCR1-215ENST00000488920 C1QTNF1Q9BXJ1 281 aa13.32□□□□□ -0.28
CCHCR1-215ENST00000488920 SPG21Q9NZD8 308 aa13.32□□□□□ -0.28
CCHCR1-215ENST00000488920 CLEC1BQ9P126 229 aa13.32□□□□□ -0.28
CCHCR1-215ENST00000488920 PUF60Q9UHX1 559 aaKnown RBP13.32□□□□□ -0.28
CCHCR1-215ENST00000488920 CD207Q9UJ71 328 aa13.32□□□□□ -0.28
CCHCR1-215ENST00000488920 MEIS3P2A8K0S8 358 aa13.31□□□□□ -0.28
CCHCR1-215ENST00000488920 FSCN2O14926 492 aa13.31□□□□□ -0.28
CCHCR1-215ENST00000488920 ASAP2O43150 1006 aa13.31□□□□□ -0.28
CCHCR1-215ENST00000488920 MBTPS2O43462 519 aa13.31□□□□□ -0.28
CCHCR1-215ENST00000488920 SKIP12755 728 aa13.31□□□□□ -0.28
CCHCR1-215ENST00000488920 COL9A1P20849 921 aa13.31□□□□□ -0.28
CCHCR1-215ENST00000488920 RBM10P98175 930 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms