RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 DACT1Q9NYF0 836 aa21.69■■□□□ 1.06
USP40-207ENST00000450940 ZBTB39O15060 712 aa21.68■■□□□ 1.06
USP40-207ENST00000450940 GAS2O43903 313 aaKnown RBP21.68■■□□□ 1.06
USP40-207ENST00000450940 FGFR1P11362 822 aa21.68■■□□□ 1.06
USP40-207ENST00000450940 DNAJB1P25685 340 aa21.68■■□□□ 1.06
USP40-207ENST00000450940 GUCY1B3Q02153 619 aa21.68■■□□□ 1.06
USP40-207ENST00000450940 RABEP1Q15276 862 aa21.68■■□□□ 1.06
USP40-207ENST00000450940 KSR1Q8IVT5 923 aa21.68■■□□□ 1.06
USP40-207ENST00000450940 PRPF31Q8WWY3 499 aaKnown RBP21.68■■□□□ 1.06
USP40-207ENST00000450940 CASD1Q96PB1 797 aa21.68■■□□□ 1.06
USP40-207ENST00000450940 CWH43Q9H720 699 aa21.68■■□□□ 1.06
USP40-207ENST00000450940 IFT122Q9HBG6 1241 aa21.68■■□□□ 1.06
USP40-207ENST00000450940 AAASQ9NRG9 546 aa21.68■■□□□ 1.06
USP40-207ENST00000450940 TYW1Q9NV66 732 aaKnown RBP21.68■■□□□ 1.06
USP40-207ENST00000450940 COL4A3BPQ9Y5P4 624 aa21.68■■□□□ 1.06
USP40-207ENST00000450940 IBSPP21815 317 aaPredicted RBP21.67■■□□□ 1.06
USP40-207ENST00000450940 KCNA5P22460 613 aa21.67■■□□□ 1.06
USP40-207ENST00000450940 SFPQP23246 707 aaKnown RBP eCLIP21.67■■□□□ 1.06
USP40-207ENST00000450940 TXKP42681 527 aa21.67■■□□□ 1.06
USP40-207ENST00000450940 POLGP54098 1239 aaPredicted RBP21.67■■□□□ 1.06
USP40-207ENST00000450940 CYP4A11Q02928 519 aa21.67■■□□□ 1.06
USP40-207ENST00000450940 ORC2Q13416 577 aaPredicted RBP21.67■■□□□ 1.06
USP40-207ENST00000450940 CTC1Q2NKJ3 1217 aa21.67■■□□□ 1.06
USP40-207ENST00000450940 PPP4R3CPQ6ZMV5 832 aa21.67■■□□□ 1.06
USP40-207ENST00000450940 TPH2Q8IWU9 490 aa21.67■■□□□ 1.06
USP40-207ENST00000450940 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.67■■□□□ 1.06
USP40-207ENST00000450940 TMEM60Q9H2L4 133 aa21.67■■□□□ 1.06
USP40-207ENST00000450940 ANKEF1Q9NU02 776 aa21.67■■□□□ 1.06
USP40-207ENST00000450940 PCDHB12Q9Y5F1 795 aa21.67■■□□□ 1.06
USP40-207ENST00000450940 ASAP2O43150 1006 aa21.66■■□□□ 1.06
USP40-207ENST00000450940 ATF7P17544 494 aaPredicted RBP21.66■■□□□ 1.06
USP40-207ENST00000450940 UBE3AQ05086 875 aa21.66■■□□□ 1.06
USP40-207ENST00000450940 CSPP1Q1MSJ5 1256 aa21.66■■□□□ 1.06
USP40-207ENST00000450940 XKR9Q5GH70 373 aa21.66■■□□□ 1.06
USP40-207ENST00000450940 LRRC55Q6ZSA7 311 aa21.66■■□□□ 1.06
USP40-207ENST00000450940 TCP11Q8WWU5 503 aa21.66■■□□□ 1.06
USP40-207ENST00000450940 PSPC1Q8WXF1 523 aaKnown RBP21.66■■□□□ 1.06
USP40-207ENST00000450940 TMEM143Q96AN5 459 aa21.66■■□□□ 1.06
USP40-207ENST00000450940 NECAB3Q96P71 396 aaPredicted RBP21.66■■□□□ 1.06
USP40-207ENST00000450940 XRCC6P12956 609 aaKnown RBP eCLIP21.65■■□□□ 1.06
USP40-207ENST00000450940 LTBRP36941 435 aa21.65■■□□□ 1.06
USP40-207ENST00000450940 HYAL1Q12794 435 aa21.65■■□□□ 1.06
USP40-207ENST00000450940 EMC2Q15006 297 aa21.65■■□□□ 1.06
USP40-207ENST00000450940 SRGAP1Q7Z6B7 1085 aa21.65■■□□□ 1.06
USP40-207ENST00000450940 COLGALT1Q8NBJ5 622 aa21.65■■□□□ 1.06
USP40-207ENST00000450940 POF1BQ8WVV4 589 aa21.65■■□□□ 1.06
USP40-207ENST00000450940 NLRP4Q96MN2 994 aa21.65■■□□□ 1.06
USP40-207ENST00000450940 XPNPEP1Q9NQW7 623 aa21.65■■□□□ 1.06
USP40-207ENST00000450940 HCSTQ9UBK5 93 aa21.65■■□□□ 1.06
USP40-207ENST00000450940 ZNF623O75123 536 aa21.64■■□□□ 1.05
USP40-207ENST00000450940 LAG3P18627 525 aa21.64■■□□□ 1.05
USP40-207ENST00000450940 MCM7P33993 719 aa21.64■■□□□ 1.05
USP40-207ENST00000450940 PHKA2P46019 1235 aa21.64■■□□□ 1.05
USP40-207ENST00000450940 LAMTOR4Q0VGL1 99 aa21.64■■□□□ 1.05
USP40-207ENST00000450940 PUS10Q3MIT2 529 aaKnown RBP21.64■■□□□ 1.05
USP40-207ENST00000450940 CLLU1OSQ5K130 101 aa21.64■■□□□ 1.05
USP40-207ENST00000450940 NOSTRINQ8IVI9 506 aa21.64■■□□□ 1.05
USP40-207ENST00000450940 FAM184AQ8NB25 1140 aa21.64■■□□□ 1.05
USP40-207ENST00000450940 RSPH1Q8WYR4 309 aa21.64■■□□□ 1.05
USP40-207ENST00000450940 FGF18O76093 207 aa21.63■■□□□ 1.05
USP40-207ENST00000450940 SPATA31C1P0DKV0 1188 aa21.63■■□□□ 1.05
USP40-207ENST00000450940 SKIP12755 728 aa21.63■■□□□ 1.05
USP40-207ENST00000450940 ATP2B1P20020 1258 aa21.63■■□□□ 1.05
USP40-207ENST00000450940 U2AF2P26368 475 aaKnown RBP eCLIP21.63■■□□□ 1.056e-8■■■□□ 15.8
USP40-207ENST00000450940 TRAPPC10P48553 1259 aa21.63■■□□□ 1.05
USP40-207ENST00000450940 POU5F1BQ06416 359 aa21.63■■□□□ 1.05
USP40-207ENST00000450940 SPOUT1Q5T280 376 aaKnown RBP21.63■■□□□ 1.05
USP40-207ENST00000450940 CATSPER4Q7RTX7 472 aa21.63■■□□□ 1.05
USP40-207ENST00000450940 FERMT3Q86UX7 667 aa21.63■■□□□ 1.05
USP40-207ENST00000450940 MINDY3Q9H8M7 445 aa21.63■■□□□ 1.05
USP40-207ENST00000450940 AGPAT5Q9NUQ2 364 aa21.63■■□□□ 1.05
USP40-207ENST00000450940 GRXCR2A6NFK2 248 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 POTEMA6NI47 508 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 DGAT1O75907 488 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 SRGAP2CP0DJJ0 459 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 IRS1P35568 1242 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 RARRES1P49788 294 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 PLCB3Q01970 1234 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 ADAM15Q13444 863 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 MXD4Q14582 209 aaPredicted RBP21.62■■□□□ 1.05
USP40-207ENST00000450940 IFNLR1Q8IU57 520 aaPredicted RBP21.62■■□□□ 1.05
USP40-207ENST00000450940 ABI1Q8IZP0 508 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 LRRC43Q8N309 656 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 MTRQ99707 1265 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 TUFT1Q9NNX1 390 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 CLDND1Q9NY35 253 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 PIN4Q9Y237 131 aaKnown RBP21.62■■□□□ 1.05
USP40-207ENST00000450940 LZTS1Q9Y250 596 aa21.62■■□□□ 1.05
USP40-207ENST00000450940 ST18O60284 1047 aa21.61■■□□□ 1.05
USP40-207ENST00000450940 RAB27AP51159 221 aa21.61■■□□□ 1.05
USP40-207ENST00000450940 PCBP1Q15365 356 aaKnown RBP eCLIP21.61■■□□□ 1.05
USP40-207ENST00000450940 ZNF174Q15697 407 aa21.61■■□□□ 1.05
USP40-207ENST00000450940 TWF2Q6IBS0 349 aaKnown RBP21.61■■□□□ 1.05
USP40-207ENST00000450940 PTCRAQ6ISU1 281 aaPredicted RBP21.61■■□□□ 1.05
USP40-207ENST00000450940 PDE12Q6L8Q7 609 aaKnown RBP21.61■■□□□ 1.05
USP40-207ENST00000450940 KCNT2Q6UVM3 1135 aa21.61■■□□□ 1.05
USP40-207ENST00000450940 C4orf32Q8N8J7 132 aa21.61■■□□□ 1.05
USP40-207ENST00000450940 RNF169Q8NCN4 708 aa21.61■■□□□ 1.05
USP40-207ENST00000450940 PPP2R3CQ969Q6 453 aa21.61■■□□□ 1.05
USP40-207ENST00000450940 POLR3CQ9BUI4 534 aaPredicted RBP21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms