RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ZCCHC11Q5TAX3 1644 aaKnown RBP21.41■■□□□ 1.02
CPSF1-213ENST00000620219 CC2D1BQ5T0F9 858 aaKnown RBP21.41■■□□□ 1.02
CPSF1-213ENST00000620219 MBD5Q9P267 1494 aa21.4■■□□□ 1.02
CPSF1-213ENST00000620219 UHRF1BP1LA0JNW5 1464 aa21.4■■□□□ 1.02
CPSF1-213ENST00000620219 TMF1P82094 1093 aa21.39■■□□□ 1.02
CPSF1-213ENST00000620219 GCC2Q8IWJ2 1684 aa21.39■■□□□ 1.01
CPSF1-213ENST00000620219 TRAK1Q9UPV9 953 aa21.39■■□□□ 1.01
CPSF1-213ENST00000620219 PZPP20742 1482 aa21.38■■□□□ 1.01
CPSF1-213ENST00000620219 RPRD2Q5VT52 1461 aaKnown RBP21.38■■□□□ 1.01
CPSF1-213ENST00000620219 CDC42BPAQ5VT25 1732 aa21.37■■□□□ 1.01
CPSF1-213ENST00000620219 PELP1Q8IZL8 1130 aaKnown RBP21.35■■□□□ 1.01
CPSF1-213ENST00000620219 SAMD9LQ8IVG5 1584 aa21.35■■□□□ 1.01
CPSF1-213ENST00000620219 POGKQ9P215 609 aa21.35■■□□□ 1.01
CPSF1-213ENST00000620219 DENND4BO75064 1496 aaPredicted RBP21.35■■□□□ 1.01
CPSF1-213ENST00000620219 KIF7Q2M1P5 1343 aa21.34■■□□□ 1.01
CPSF1-213ENST00000620219 CFAP70Q5T0N1 1121 aa21.33■■□□□ 1.01
CPSF1-213ENST00000620219 DHX29Q7Z478 1369 aaKnown RBP21.33■■□□□ 1
CPSF1-213ENST00000620219 KNSTRNQ9Y448 316 aa21.32■■□□□ 1
CPSF1-213ENST00000620219 SHANK2Q9UPX8 1470 aa21.32■■□□□ 1
CPSF1-213ENST00000620219 SHROOM2Q13796 1616 aa21.32■■□□□ 1
CPSF1-213ENST00000620219 TMEM132EQ6IEE7 984 aa21.31■■□□□ 1
CPSF1-213ENST00000620219 ADGRL2O95490 1459 aa21.31■■□□□ 1
CPSF1-213ENST00000620219 ARHGEF12Q9NZN5 1544 aa21.3■■□□□ 1
CPSF1-213ENST00000620219 TNNT2P45379 298 aaPredicted RBP21.29■■□□□ 1
CPSF1-213ENST00000620219 CCDC7Q96M83 1385 aa21.29■■□□□ 1
CPSF1-213ENST00000620219 MYO5CQ9NQX4 1742 aa21.29■■□□□ 1
CPSF1-213ENST00000620219 FKBP8Q14318 412 aa21.28■■□□□ 1
CPSF1-213ENST00000620219 CDCA8Q53HL2 280 aa21.28■■□□□ 1
CPSF1-213ENST00000620219 ADCY10Q96PN6 1610 aa21.28■■□□□ 1
CPSF1-213ENST00000620219 IRX6P78412 446 aaPredicted RBP21.27■□□□□ 0.99
CPSF1-213ENST00000620219 DUOX2Q9NRD8 1548 aa21.26■□□□□ 0.99
CPSF1-213ENST00000620219 FAM135AQ9P2D6 1515 aa21.26■□□□□ 0.99
CPSF1-213ENST00000620219 FBXO31Q5XUX0 539 aaPredicted RBP21.26■□□□□ 0.99
CPSF1-213ENST00000620219 CCER2I3L3R5 266 aa21.26■□□□□ 0.99
CPSF1-213ENST00000620219 ZNF518AQ6AHZ1 1483 aa21.26■□□□□ 0.99
CPSF1-213ENST00000620219 PREX2Q70Z35 1606 aa21.25■□□□□ 0.99
CPSF1-213ENST00000620219 SRPK2P78362 688 aaKnown RBP21.24■□□□□ 0.99
CPSF1-213ENST00000620219 CCDC184Q52MB2 194 aa21.23■□□□□ 0.99
CPSF1-213ENST00000620219 VGFO15240 615 aaPredicted RBP21.22■□□□□ 0.99
CPSF1-213ENST00000620219 PRKRIP1Q9H875 184 aaPredicted RBP21.21■□□□□ 0.99
CPSF1-213ENST00000620219 A2MP01023 1474 aa21.21■□□□□ 0.99
CPSF1-213ENST00000620219 ERBINQ96RT1 1412 aa21.21■□□□□ 0.99
CPSF1-213ENST00000620219 CDC42BPBQ9Y5S2 1711 aa21.21■□□□□ 0.99
CPSF1-213ENST00000620219 ADGBQ8N7X0 1667 aa21.21■□□□□ 0.99
CPSF1-213ENST00000620219 PLEKHG5O94827 1062 aa21.19■□□□□ 0.98
CPSF1-213ENST00000620219 PANK3Q9H999 370 aa21.19■□□□□ 0.98
CPSF1-213ENST00000620219 ARHGEF5Q12774 1597 aa21.19■□□□□ 0.98
CPSF1-213ENST00000620219 TEX14Q8IWB6 1497 aa21.17■□□□□ 0.98
CPSF1-213ENST00000620219 ATP7AQ04656 1500 aa21.17■□□□□ 0.98
CPSF1-213ENST00000620219 IDI1Q13907 227 aa21.16■□□□□ 0.98
CPSF1-213ENST00000620219 RTEL1-TNFRSF6BF6WH68 1400 aa21.16■□□□□ 0.98
CPSF1-213ENST00000620219 WDR43Q15061 677 aaKnown RBP eCLIP21.16■□□□□ 0.989e-14■□□□□ 10.2
CPSF1-213ENST00000620219 ADGRF5Q8IZF2 1346 aa21.15■□□□□ 0.98
CPSF1-213ENST00000620219 ABCC1P33527 1531 aa21.15■□□□□ 0.98
CPSF1-213ENST00000620219 CNTLNQ9NXG0 1405 aa21.14■□□□□ 0.97
CPSF1-213ENST00000620219 NUTM2FA1L443 756 aa21.13■□□□□ 0.97
CPSF1-213ENST00000620219 CEBPAP49715 358 aaPredicted RBP21.13■□□□□ 0.97
CPSF1-213ENST00000620219 CFAP65Q6ZU64 1925 aaKnown RBP21.12■□□□□ 0.97
CPSF1-213ENST00000620219 EIF3AQ14152 1382 aaKnown RBP21.12■□□□□ 0.97
CPSF1-213ENST00000620219 HDGFP51858 240 aaKnown RBP21.12■□□□□ 0.97
CPSF1-213ENST00000620219 MINK1Q8N4C8 1332 aaPredicted RBP21.12■□□□□ 0.97
CPSF1-213ENST00000620219 SUPT16HQ9Y5B9 1047 aaKnown RBP21.11■□□□□ 0.97
CPSF1-213ENST00000620219 PPM1GO15355 546 aaPredicted RBP21.1■□□□□ 0.97
CPSF1-213ENST00000620219 C14orf37Q86TY3 774 aa21.1■□□□□ 0.97
CPSF1-213ENST00000620219 POGZQ7Z3K3 1410 aa21.1■□□□□ 0.97
CPSF1-213ENST00000620219 YEATS2Q9ULM3 1422 aa21.09■□□□□ 0.97
CPSF1-213ENST00000620219 SLC52A1Q9NWF4 448 aa21.08■□□□□ 0.97
CPSF1-213ENST00000620219 KTN1Q86UP2 1357 aaKnown RBP21.08■□□□□ 0.97
CPSF1-213ENST00000620219 CROCC2H7BZ55 1655 aa21.08■□□□□ 0.96
CPSF1-213ENST00000620219 TSPOAP1O95153 1857 aa21.08■□□□□ 0.96
CPSF1-213ENST00000620219 CENPJQ9HC77 1338 aaPredicted RBP21.06■□□□□ 0.96
CPSF1-213ENST00000620219 STAC3Q96MF2 364 aa21.04■□□□□ 0.96
CPSF1-213ENST00000620219 EID1Q9Y6B2 187 aa21.04■□□□□ 0.96
CPSF1-213ENST00000620219 SLC24A1O60721 1099 aa21.03■□□□□ 0.96
CPSF1-213ENST00000620219 NEUROD2Q15784 382 aa21.02■□□□□ 0.95
CPSF1-213ENST00000620219 MORC1Q86VD1 984 aa21.02■□□□□ 0.95
CPSF1-213ENST00000620219 SOX12O15370 315 aa21.01■□□□□ 0.95
CPSF1-213ENST00000620219 NOS1P29475 1434 aa21.01■□□□□ 0.95
CPSF1-213ENST00000620219 CABP2Q9NPB3 220 aa21■□□□□ 0.95
CPSF1-213ENST00000620219 NEO1Q92859 1461 aa21■□□□□ 0.95
CPSF1-213ENST00000620219 RALBP1Q15311 655 aa21■□□□□ 0.95
CPSF1-213ENST00000620219 RIMBP3CA6NJZ7 1639 aa20.99■□□□□ 0.95
CPSF1-213ENST00000620219 RIMBP3BA6NNM3 1639 aa20.99■□□□□ 0.95
CPSF1-213ENST00000620219 RIMBP3Q9UFD9 1639 aa20.99■□□□□ 0.95
CPSF1-213ENST00000620219 ZFYVE16Q7Z3T8 1539 aa20.97■□□□□ 0.95
CPSF1-213ENST00000620219 PRAG1Q86YV5 1406 aa20.97■□□□□ 0.95
CPSF1-213ENST00000620219 PLA2R1Q13018 1463 aa20.96■□□□□ 0.95
CPSF1-213ENST00000620219 PRAM1Q96QH2 718 aa20.96■□□□□ 0.95
CPSF1-213ENST00000620219 MAST1Q9Y2H9 1570 aa20.95■□□□□ 0.94
CPSF1-213ENST00000620219 SLC26A8Q96RN1 970 aa20.95■□□□□ 0.94
CPSF1-213ENST00000620219 ABCA9Q8IUA7 1624 aa20.95■□□□□ 0.94
CPSF1-213ENST00000620219 TXNDC2Q86VQ3 553 aa20.94■□□□□ 0.94
CPSF1-213ENST00000620219 NLRP13Q86W25 1043 aa20.94■□□□□ 0.94
CPSF1-213ENST00000620219 SLC12A5Q9H2X9 1139 aa20.94■□□□□ 0.94
CPSF1-213ENST00000620219 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.94■□□□□ 0.94
CPSF1-213ENST00000620219 EVC2Q86UK5 1308 aa20.94■□□□□ 0.94
CPSF1-213ENST00000620219 ZBTB7CA1YPR0 619 aa20.94■□□□□ 0.94
CPSF1-213ENST00000620219 NEFMP07197 916 aa20.94■□□□□ 0.94
CPSF1-213ENST00000620219 RALGAPBQ86X10 1494 aa20.92■□□□□ 0.94
CPSF1-213ENST00000620219 MYBBP1AQ9BQG0 1328 aaKnown RBP20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms