RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 RBM26Q5T8P6 1007 aaKnown RBP10.11□□□□□ -0.79
LINC00560-201ENST00000564593 KCTD12Q96CX2 325 aaKnown RBP10.09□□□□□ -0.79
LINC00560-201ENST00000564593 PPP4R3BQ5MIZ7 849 aa10.08□□□□□ -0.8
LINC00560-201ENST00000564593 GPIHBP1Q8IV16 184 aa10.08□□□□□ -0.8
LINC00560-201ENST00000564593 OXER1Q8TDS5 423 aa10.08□□□□□ -0.8
LINC00560-201ENST00000564593 ZMYND10O75800 440 aa10.07□□□□□ -0.8
LINC00560-201ENST00000564593 TBC1D12O60347 775 aa10.06□□□□□ -0.8
LINC00560-201ENST00000564593 STAC3Q96MF2 364 aa10.06□□□□□ -0.8
LINC00560-201ENST00000564593 SLC24A3Q9HC58 644 aa10.06□□□□□ -0.8
LINC00560-201ENST00000564593 GRXCR2A6NFK2 248 aa10.05□□□□□ -0.8
LINC00560-201ENST00000564593 RGS20O76081 388 aa10.03□□□□□ -0.8
LINC00560-201ENST00000564593 BARGINQ6ZT62 677 aa10.03□□□□□ -0.8
LINC00560-201ENST00000564593 KCNH8Q96L42 1107 aa10.02□□□□□ -0.81
LINC00560-201ENST00000564593 EVI5O60447 810 aa10.01□□□□□ -0.81
LINC00560-201ENST00000564593 IFFO2Q5TF58 517 aa10.01□□□□□ -0.81
LINC00560-201ENST00000564593 DDX12PQ92771 950 aa10.01□□□□□ -0.81
LINC00560-201ENST00000564593 KCNK17Q96T54 332 aa10.01□□□□□ -0.81
LINC00560-201ENST00000564593 KRI1Q8N9T8 703 aaKnown RBP9.99□□□□□ -0.81
LINC00560-201ENST00000564593 VPS9D1Q9Y2B5 631 aa9.99□□□□□ -0.81
LINC00560-201ENST00000564593 OSBPP22059 807 aa9.97□□□□□ -0.81
LINC00560-201ENST00000564593 PTPN5P54829 565 aa9.97□□□□□ -0.81
LINC00560-201ENST00000564593 BRPF1P55201 1214 aaPredicted RBP9.97□□□□□ -0.81
LINC00560-201ENST00000564593 NUTM2FA1L443 756 aa9.97□□□□□ -0.81
LINC00560-201ENST00000564593 SLC4A5Q9BY07 1137 aa9.96□□□□□ -0.82
LINC00560-201ENST00000564593 NEUROD2Q15784 382 aa9.95□□□□□ -0.82
LINC00560-201ENST00000564593 TMEM132AQ24JP5 1023 aa9.94□□□□□ -0.82
LINC00560-201ENST00000564593 AK7Q96M32 723 aa9.94□□□□□ -0.82
LINC00560-201ENST00000564593 ANO8Q9HCE9 1232 aaPredicted RBP9.94□□□□□ -0.82
LINC00560-201ENST00000564593 IRX2Q9BZI1 471 aaPredicted RBP9.93□□□□□ -0.82
LINC00560-201ENST00000564593 GPR37O15354 613 aa9.92□□□□□ -0.82
LINC00560-201ENST00000564593 A0A0G2JS52 829 aa9.92□□□□□ -0.82
LINC00560-201ENST00000564593 THSD4Q6ZMP0 1018 aa9.92□□□□□ -0.82
LINC00560-201ENST00000564593 BCL2L12Q9HB09 334 aa9.92□□□□□ -0.82
LINC00560-201ENST00000564593 BHMG1C9JSJ3 638 aaPredicted RBP9.9□□□□□ -0.82
LINC00560-201ENST00000564593 PRIM1P49642 420 aaKnown RBP9.89□□□□□ -0.83
LINC00560-201ENST00000564593 ZNF454Q8N9F8 522 aa9.89□□□□□ -0.83
LINC00560-201ENST00000564593 FCHSD2O94868 740 aa9.88□□□□□ -0.83
LINC00560-201ENST00000564593 PHF14O94880 888 aa9.88□□□□□ -0.83
LINC00560-201ENST00000564593 GNPATO15228 680 aa9.87□□□□□ -0.83
LINC00560-201ENST00000564593 HIC1Q14526 733 aa9.87□□□□□ -0.83
LINC00560-201ENST00000564593 EPAS1Q99814 870 aa9.87□□□□□ -0.83
LINC00560-201ENST00000564593 MINK1Q8N4C8 1332 aaPredicted RBP9.86□□□□□ -0.83
LINC00560-201ENST00000564593 GOLGA8CPA6NN73 597 aa9.86□□□□□ -0.83
LINC00560-201ENST00000564593 TRIM66O15016 1216 aa9.85□□□□□ -0.83
LINC00560-201ENST00000564593 PTPREP23469 700 aa9.85□□□□□ -0.83
LINC00560-201ENST00000564593 FOSBP53539 338 aa9.85□□□□□ -0.83
LINC00560-201ENST00000564593 WNT2BQ93097 391 aa9.85□□□□□ -0.83
LINC00560-201ENST00000564593 ZBED2Q9BTP6 218 aa9.85□□□□□ -0.83
LINC00560-201ENST00000564593 EN1Q05925 392 aaPredicted RBP9.84□□□□□ -0.83
LINC00560-201ENST00000564593 MAP2K5Q13163 448 aa9.84□□□□□ -0.83
LINC00560-201ENST00000564593 PTGDRQ13258 359 aa9.84□□□□□ -0.83
LINC00560-201ENST00000564593 MRPL50Q8N5N7 158 aaKnown RBP9.84□□□□□ -0.83
LINC00560-201ENST00000564593 PCDHGA10Q9Y5H3 936 aa9.84□□□□□ -0.83
LINC00560-201ENST00000564593 MAP3K7O43318 606 aa9.84□□□□□ -0.83
LINC00560-201ENST00000564593 RBM33Q96EV2 1170 aaKnown RBP9.84□□□□□ -0.83
LINC00560-201ENST00000564593 GTF3C3Q9Y5Q9 886 aa9.84□□□□□ -0.83
LINC00560-201ENST00000564593 IRF6O14896 467 aa9.83□□□□□ -0.84
LINC00560-201ENST00000564593 FECHP22830 423 aa9.83□□□□□ -0.84
LINC00560-201ENST00000564593 TYW1BQ6NUM6 668 aa9.83□□□□□ -0.84
LINC00560-201ENST00000564593 PDE4DQ08499 809 aa9.82□□□□□ -0.84
LINC00560-201ENST00000564593 GPBP1L1Q9HC44 474 aaPredicted RBP9.82□□□□□ -0.84
LINC00560-201ENST00000564593 CCDC102AQ96A19 550 aa9.81□□□□□ -0.84
LINC00560-201ENST00000564593 JPH4Q96JJ6 628 aa9.81□□□□□ -0.84
LINC00560-201ENST00000564593 NBPF3Q9H094 633 aa9.8□□□□□ -0.84
LINC00560-201ENST00000564593 CDHR5Q9HBB8 845 aa9.8□□□□□ -0.84
LINC00560-201ENST00000564593 FBXW7Q969H0 707 aa9.8□□□□□ -0.84
LINC00560-201ENST00000564593 TSR1Q2NL82 804 aaKnown RBP9.78□□□□□ -0.84
LINC00560-201ENST00000564593 KDM4CQ9H3R0 1056 aa9.78□□□□□ -0.84
LINC00560-201ENST00000564593 NPDC1Q9NQX5 325 aaPredicted RBP9.78□□□□□ -0.84
LINC00560-201ENST00000564593 ZDHHC16Q969W1 377 aa9.76□□□□□ -0.85
LINC00560-201ENST00000564593 ITGBL1O95965 494 aaPredicted RBP9.75□□□□□ -0.85
LINC00560-201ENST00000564593 ADAM33Q9BZ11 813 aa9.75□□□□□ -0.85
LINC00560-201ENST00000564593 AMHR2Q16671 573 aa9.74□□□□□ -0.85
LINC00560-201ENST00000564593 DAXXQ9UER7 740 aaPredicted RBP9.74□□□□□ -0.85
LINC00560-201ENST00000564593 C6orf132Q5T0Z8 1188 aa9.73□□□□□ -0.85
LINC00560-201ENST00000564593 IL27Q8NEV9 243 aa9.73□□□□□ -0.85
LINC00560-201ENST00000564593 ANKK1Q8NFD2 765 aa9.71□□□□□ -0.85
LINC00560-201ENST00000564593 CERKQ8TCT0 537 aa9.71□□□□□ -0.86
LINC00560-201ENST00000564593 TTLL12Q14166 644 aaPredicted RBP9.7□□□□□ -0.86
LINC00560-201ENST00000564593 RABGEF1Q9UJ41 708 aa9.7□□□□□ -0.86
LINC00560-201ENST00000564593 PPP1R3GB7ZBB8 358 aa9.69□□□□□ -0.86
LINC00560-201ENST00000564593 Q6ZNB5 142 aa9.69□□□□□ -0.86
LINC00560-201ENST00000564593 PARP9Q8IXQ6 854 aa9.69□□□□□ -0.86
LINC00560-201ENST00000564593 FAM117AQ9C073 453 aa9.67□□□□□ -0.86
LINC00560-201ENST00000564593 NYAP1Q6ZVC0 841 aa9.67□□□□□ -0.86
LINC00560-201ENST00000564593 PADI6Q6TGC4 694 aa9.66□□□□□ -0.86
LINC00560-201ENST00000564593 LAPTM4BQ86VI4 370 aa9.66□□□□□ -0.86
LINC00560-201ENST00000564593 TIMELESSQ9UNS1 1208 aa9.66□□□□□ -0.86
LINC00560-201ENST00000564593 SOWAHBA6NEL2 793 aa9.65□□□□□ -0.86
LINC00560-201ENST00000564593 BCAMP50895 628 aa9.65□□□□□ -0.86
LINC00560-201ENST00000564593 PROX2Q3B8N5 592 aa9.65□□□□□ -0.86
LINC00560-201ENST00000564593 FAM161AQ3B820 660 aa9.64□□□□□ -0.87
LINC00560-201ENST00000564593 DDRGK1Q96HY6 314 aa9.64□□□□□ -0.87
LINC00560-201ENST00000564593 OATP04181 439 aa9.63□□□□□ -0.87
LINC00560-201ENST00000564593 GIGYF2Q6Y7W6 1299 aaKnown RBP9.63□□□□□ -0.87
LINC00560-201ENST00000564593 ERICH6Q7L0X2 663 aa9.63□□□□□ -0.87
LINC00560-201ENST00000564593 PHOX2BQ99453 314 aa9.63□□□□□ -0.87
LINC00560-201ENST00000564593 RBM27Q9P2N5 1060 aaKnown RBP9.63□□□□□ -0.87
LINC00560-201ENST00000564593 COL9A1P20849 921 aa9.63□□□□□ -0.87
LINC00560-201ENST00000564593 PRSS12P56730 875 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms