RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 SH3D19Q5HYK7 790 aa10.21□□□□□ -0.77
SCFD1-208ENST00000553278 MAMSTRQ6ZN01 415 aa10.21□□□□□ -0.77
SCFD1-208ENST00000553278 PDCD7Q8N8D1 485 aaKnown RBP10.21□□□□□ -0.77
SCFD1-208ENST00000553278 OXER1Q8TDS5 423 aa10.2□□□□□ -0.78
SCFD1-208ENST00000553278 FAM163AQ96GL9 167 aaPredicted RBP10.2□□□□□ -0.78
SCFD1-208ENST00000553278 MCM6Q14566 821 aa10.19□□□□□ -0.78
SCFD1-208ENST00000553278 C7P10643 843 aa10.18□□□□□ -0.78
SCFD1-208ENST00000553278 CLCN1P35523 988 aa10.18□□□□□ -0.78
SCFD1-208ENST00000553278 SLC39A7Q92504 469 aa10.18□□□□□ -0.78
SCFD1-208ENST00000553278 ASTLQ6HA08 431 aaPredicted RBP10.17□□□□□ -0.78
SCFD1-208ENST00000553278 CCDC9Q9Y3X0 531 aaKnown RBP10.17□□□□□ -0.78
SCFD1-208ENST00000553278 EVI5O60447 810 aa10.16□□□□□ -0.78
SCFD1-208ENST00000553278 OCEL1Q9H607 264 aa10.16□□□□□ -0.78
SCFD1-208ENST00000553278 RAD21O60216 631 aa10.15□□□□□ -0.78
SCFD1-208ENST00000553278 SKIV2LQ15477 1246 aaKnown RBP10.15□□□□□ -0.78
SCFD1-208ENST00000553278 PROSER2Q86WR7 435 aaPredicted RBP10.15□□□□□ -0.78
SCFD1-208ENST00000553278 REPIN1Q9BWE0 567 aaKnown RBP10.15□□□□□ -0.78
SCFD1-208ENST00000553278 PRIM1P49642 420 aaKnown RBP10.14□□□□□ -0.79
SCFD1-208ENST00000553278 GPCPD1Q9NPB8 672 aa10.14□□□□□ -0.79
SCFD1-208ENST00000553278 ATP1B4Q9UN42 357 aaPredicted RBP10.14□□□□□ -0.79
SCFD1-208ENST00000553278 ATMINO43313 823 aaPredicted RBP10.13□□□□□ -0.79
SCFD1-208ENST00000553278 IRX5P78411 483 aaPredicted RBP10.13□□□□□ -0.79
SCFD1-208ENST00000553278 TMUB1Q9BVT8 246 aa10.13□□□□□ -0.79
SCFD1-208ENST00000553278 IER5LQ5T953 404 aa10.12□□□□□ -0.79
SCFD1-208ENST00000553278 SCUBE2Q9NQ36 999 aa10.12□□□□□ -0.79
SCFD1-208ENST00000553278 MDM2Q00987 491 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-208ENST00000553278 CCDC97Q96F63 343 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-208ENST00000553278 L3MBTL3Q96JM7 780 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-208ENST00000553278 SERPINA10Q9UK55 444 aa10.11□□□□□ -0.79
SCFD1-208ENST00000553278 ZNF777Q9ULD5 760 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-208ENST00000553278 SSTR3P32745 418 aaPredicted RBP10.1□□□□□ -0.79
SCFD1-208ENST00000553278 PLCG2P16885 1265 aa10.08□□□□□ -0.8
SCFD1-208ENST00000553278 EPAS1Q99814 870 aa10.08□□□□□ -0.8
SCFD1-208ENST00000553278 BEGAINQ9BUH8 593 aa10.08□□□□□ -0.8
SCFD1-208ENST00000553278 ATN1P54259 1190 aaPredicted RBP10.07□□□□□ -0.8
SCFD1-208ENST00000553278 EN1Q05925 392 aaPredicted RBP10.07□□□□□ -0.8
SCFD1-208ENST00000553278 MAP3K7O43318 606 aa10.06□□□□□ -0.8
SCFD1-208ENST00000553278 FNBP4Q8N3X1 1017 aaPredicted RBP10.06□□□□□ -0.8
SCFD1-208ENST00000553278 CDHR5Q9HBB8 845 aa10.06□□□□□ -0.8
SCFD1-208ENST00000553278 NPDC1Q9NQX5 325 aaPredicted RBP10.06□□□□□ -0.8
SCFD1-208ENST00000553278 CDAN1Q8IWY9 1227 aa10.05□□□□□ -0.8
SCFD1-208ENST00000553278 NECTIN2Q92692 538 aa10.05□□□□□ -0.8
SCFD1-208ENST00000553278 SPDYE5A6NIY4 337 aa10.04□□□□□ -0.8
SCFD1-208ENST00000553278 PHF14O94880 888 aa10.04□□□□□ -0.8
SCFD1-208ENST00000553278 TMEM92Q6UXU6 159 aa10.04□□□□□ -0.8
SCFD1-208ENST00000553278 KCTD17Q8N5Z5 321 aa10.04□□□□□ -0.8
SCFD1-208ENST00000553278 PROCA1Q8NCQ7 364 aaPredicted RBP10.04□□□□□ -0.8
SCFD1-208ENST00000553278 PTCD2Q8WV60 388 aaKnown RBP10.04□□□□□ -0.8
SCFD1-208ENST00000553278 POM121Q96HA1 1249 aa10.04□□□□□ -0.8
SCFD1-208ENST00000553278 TRAIPQ9BWF2 469 aa10.04□□□□□ -0.8
SCFD1-208ENST00000553278 ANO8Q9HCE9 1232 aaPredicted RBP10.04□□□□□ -0.8
SCFD1-208ENST00000553278 POLR3EQ9NVU0 708 aa10.04□□□□□ -0.8
SCFD1-208ENST00000553278 FAM217BQ9NTX9 383 aaPredicted RBP10.03□□□□□ -0.8
SCFD1-208ENST00000553278 PHOX2BQ99453 314 aa10.02□□□□□ -0.81
SCFD1-208ENST00000553278 OATP04181 439 aa10.01□□□□□ -0.81
SCFD1-208ENST00000553278 BANK1Q8NDB2 785 aa10□□□□□ -0.81
SCFD1-208ENST00000553278 RBM33Q96EV2 1170 aaKnown RBP10□□□□□ -0.81
SCFD1-208ENST00000553278 GNL3Q9BVP2 549 aaKnown RBP eCLIP10□□□□□ -0.81
SCFD1-208ENST00000553278 CLK2P49760 499 aaKnown RBP9.99□□□□□ -0.81
SCFD1-208ENST00000553278 DIXDC1Q155Q3 683 aa9.99□□□□□ -0.81
SCFD1-208ENST00000553278 MYSM1Q5VVJ2 828 aa9.99□□□□□ -0.81
SCFD1-208ENST00000553278 COG6Q9Y2V7 657 aa9.99□□□□□ -0.81
SCFD1-208ENST00000553278 METTL3Q86U44 580 aaKnown RBP9.98□□□□□ -0.81
SCFD1-208ENST00000553278 SLAIN1Q8ND83 568 aa9.98□□□□□ -0.81
SCFD1-208ENST00000553278 ZNF330Q9Y3S2 320 aaPredicted RBP9.98□□□□□ -0.81
SCFD1-208ENST00000553278 SLC34A2O95436 690 aa9.97□□□□□ -0.81
SCFD1-208ENST00000553278 TYW1BQ6NUM6 668 aa9.97□□□□□ -0.81
SCFD1-208ENST00000553278 POTEFA5A3E0 1075 aa9.96□□□□□ -0.82
SCFD1-208ENST00000553278 TMEM259Q4ZIN3 620 aa9.96□□□□□ -0.82
SCFD1-208ENST00000553278 WWC1Q8IX03 1113 aa9.96□□□□□ -0.82
SCFD1-208ENST00000553278 RFC5P40937 340 aa9.95□□□□□ -0.82
SCFD1-208ENST00000553278 TSR1Q2NL82 804 aaKnown RBP9.95□□□□□ -0.82
SCFD1-208ENST00000553278 CERKQ8TCT0 537 aa9.95□□□□□ -0.82
SCFD1-208ENST00000553278 FBXW7Q969H0 707 aa9.95□□□□□ -0.82
SCFD1-208ENST00000553278 PCDHGA10Q9Y5H3 936 aa9.95□□□□□ -0.82
SCFD1-208ENST00000553278 SEC24BO95487 1268 aa9.94□□□□□ -0.82
SCFD1-208ENST00000553278 AEBP1Q8IUX7 1158 aa9.94□□□□□ -0.82
SCFD1-208ENST00000553278 FAM161AQ3B820 660 aa9.93□□□□□ -0.82
SCFD1-208ENST00000553278 PXYLP1Q8TE99 480 aa9.93□□□□□ -0.82
SCFD1-208ENST00000553278 TBC1D2Q9BYX2 928 aa9.93□□□□□ -0.82
SCFD1-208ENST00000553278 SNRKQ9NRH2 765 aa9.93□□□□□ -0.82
SCFD1-208ENST00000553278 NLRP7Q8WX94 980 aa9.92□□□□□ -0.82
SCFD1-208ENST00000553278 ADGRG1Q9Y653 693 aa9.92□□□□□ -0.82
SCFD1-208ENST00000553278 PADI6Q6TGC4 694 aa9.91□□□□□ -0.82
SCFD1-208ENST00000553278 PRM3Q9NNZ6 103 aa9.91□□□□□ -0.82
SCFD1-208ENST00000553278 RETREG2Q8NC44 543 aa9.9□□□□□ -0.82
SCFD1-208ENST00000553278 PPP1R15AO75807 674 aaPredicted RBP9.89□□□□□ -0.83
SCFD1-208ENST00000553278 PDE4CQ08493 712 aa9.89□□□□□ -0.83
SCFD1-208ENST00000553278 PPP2R2DQ66LE6 453 aa9.89□□□□□ -0.83
SCFD1-208ENST00000553278 C3orf67Q6ZVT6 689 aa9.89□□□□□ -0.83
SCFD1-208ENST00000553278 JPH4Q96JJ6 628 aa9.89□□□□□ -0.83
SCFD1-208ENST00000553278 COLQQ9Y215 455 aaPredicted RBP9.89□□□□□ -0.83
SCFD1-208ENST00000553278 ACIN1Q9UKV3 1341 aaKnown RBP9.88□□□□□ -0.83
SCFD1-208ENST00000553278 RBM27Q9P2N5 1060 aaKnown RBP9.88□□□□□ -0.83
SCFD1-208ENST00000553278 RIC3Q7Z5B4 369 aa9.87□□□□□ -0.83
SCFD1-208ENST00000553278 RBM46Q8TBY0 533 aaKnown RBP9.86□□□□□ -0.83
SCFD1-208ENST00000553278 CALR3Q96L12 384 aaKnown RBP9.86□□□□□ -0.83
SCFD1-208ENST00000553278 GDPD2Q9HCC8 539 aa9.86□□□□□ -0.83
SCFD1-208ENST00000553278 LIMD1Q9UGP4 676 aa9.86□□□□□ -0.83
SCFD1-208ENST00000553278 MMRN1Q13201 1228 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms