RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 TIMELESSQ9UNS1 1208 aa19.14■□□□□ 0.65
CHD4-210ENST00000544040 HDGFP51858 240 aaKnown RBP19.14■□□□□ 0.65
CHD4-210ENST00000544040 RILPL2Q969X0 211 aa19.14■□□□□ 0.65
CHD4-210ENST00000544040 SETD5Q9C0A6 1442 aa19.13■□□□□ 0.65
CHD4-210ENST00000544040 USP35Q9P2H5 1018 aa19.13■□□□□ 0.65
CHD4-210ENST00000544040 GOLGA6L19H0YKK7 550 aa19.12■□□□□ 0.65
CHD4-210ENST00000544040 EIF4G1Q04637 1599 aaKnown RBP19.12■□□□□ 0.65
CHD4-210ENST00000544040 GSE1Q14687 1217 aa19.12■□□□□ 0.65
CHD4-210ENST00000544040 TMX4Q9H1E5 349 aaPredicted RBP19.11■□□□□ 0.65
CHD4-210ENST00000544040 RRP7AQ9Y3A4 280 aaKnown RBP19.11■□□□□ 0.65
CHD4-210ENST00000544040 PLIN1O60240 522 aa19.1■□□□□ 0.65
CHD4-210ENST00000544040 BECN2A8MW95 431 aa19.09■□□□□ 0.65
CHD4-210ENST00000544040 G3V3G9 751 aa19.09■□□□□ 0.65
CHD4-210ENST00000544040 TSR1Q2NL82 804 aaKnown RBP19.09■□□□□ 0.65
CHD4-210ENST00000544040 DCAF8Q5TAQ9 597 aa19.09■□□□□ 0.65
CHD4-210ENST00000544040 FAM184AQ8NB25 1140 aa19.08■□□□□ 0.65
CHD4-210ENST00000544040 BCL11BQ9C0K0 894 aaPredicted RBP19.08■□□□□ 0.65
CHD4-210ENST00000544040 FRAT2O75474 233 aaPredicted RBP19.08■□□□□ 0.65
CHD4-210ENST00000544040 BCL2L13Q9BXK5 485 aa19.08■□□□□ 0.64
CHD4-210ENST00000544040 FAM13BQ9NYF5 915 aa19.08■□□□□ 0.64
CHD4-210ENST00000544040 NUTM2DQ5VT03 806 aaPredicted RBP19.08■□□□□ 0.64
CHD4-210ENST00000544040 MCTP1Q6DN14 999 aa19.07■□□□□ 0.64
CHD4-210ENST00000544040 ANKRD45Q5TZF3 282 aa19.07■□□□□ 0.64
CHD4-210ENST00000544040 LTV1Q96GA3 475 aaPredicted RBP19.07■□□□□ 0.64
CHD4-210ENST00000544040 PDE4AP27815 886 aa19.06■□□□□ 0.64
CHD4-210ENST00000544040 ELL2O00472 640 aaPredicted RBP19.04■□□□□ 0.64
CHD4-210ENST00000544040 GPS2Q13227 327 aa19.04■□□□□ 0.64
CHD4-210ENST00000544040 KIF3AQ9Y496 699 aa19.03■□□□□ 0.64
CHD4-210ENST00000544040 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.03■□□□□ 0.64
CHD4-210ENST00000544040 PCMTD1Q96MG8 357 aaPredicted RBP19.03■□□□□ 0.64
CHD4-210ENST00000544040 FBXW7Q969H0 707 aa19.03■□□□□ 0.64
CHD4-210ENST00000544040 FAM161AQ3B820 660 aa19.03■□□□□ 0.64
CHD4-210ENST00000544040 MPHOSPH9Q99550 1183 aa19.02■□□□□ 0.64
CHD4-210ENST00000544040 CCDC70Q6NSX1 233 aa19.02■□□□□ 0.63
CHD4-210ENST00000544040 BAZ1BQ9UIG0 1483 aaKnown RBP19.02■□□□□ 0.63
CHD4-210ENST00000544040 TPM1P09493 284 aa19.01■□□□□ 0.63
CHD4-210ENST00000544040 TRHP20396 242 aaPredicted RBP19.01■□□□□ 0.63
CHD4-210ENST00000544040 TPM2P07951 284 aa19.01■□□□□ 0.63
CHD4-210ENST00000544040 EXOC6Q8TAG9 804 aa19■□□□□ 0.63
CHD4-210ENST00000544040 SKOR2Q2VWA4 1001 aaPredicted RBP19■□□□□ 0.63
CHD4-210ENST00000544040 ARHGAP35Q9NRY4 1499 aa19■□□□□ 0.63
CHD4-210ENST00000544040 NUTM2FA1L443 756 aa18.99■□□□□ 0.63
CHD4-210ENST00000544040 FHAD1B1AJZ9 1412 aa18.99■□□□□ 0.63
CHD4-210ENST00000544040 CRBNQ96SW2 442 aa18.99■□□□□ 0.63
CHD4-210ENST00000544040 KANK4Q5T7N3 995 aaPredicted RBP18.98■□□□□ 0.63
CHD4-210ENST00000544040 CENPQQ7L2Z9 268 aaPredicted RBP18.98■□□□□ 0.63
CHD4-210ENST00000544040 HOMER1Q86YM7 354 aa18.98■□□□□ 0.63
CHD4-210ENST00000544040 AKAP17AQ02040 695 aaKnown RBP18.98■□□□□ 0.63
CHD4-210ENST00000544040 HDAC5Q9UQL6 1122 aa18.98■□□□□ 0.63
CHD4-210ENST00000544040 CALRP27797 417 aaKnown RBP18.98■□□□□ 0.63
CHD4-210ENST00000544040 RAD21O60216 631 aa18.98■□□□□ 0.63
CHD4-210ENST00000544040 RAB3GAP2Q9H2M9 1393 aa18.97■□□□□ 0.63
CHD4-210ENST00000544040 AMPHP49418 695 aa18.97■□□□□ 0.63
CHD4-210ENST00000544040 GTF2E1P29083 439 aaPredicted RBP18.96■□□□□ 0.63
CHD4-210ENST00000544040 NUP155O75694 1391 aa18.96■□□□□ 0.63
CHD4-210ENST00000544040 ATP6V1DQ9Y5K8 247 aa18.96■□□□□ 0.63
CHD4-210ENST00000544040 EIF3AQ14152 1382 aaKnown RBP18.95■□□□□ 0.62
CHD4-210ENST00000544040 FOSBP53539 338 aa18.95■□□□□ 0.62
CHD4-210ENST00000544040 TEX35Q5T0J7 233 aa18.95■□□□□ 0.62
CHD4-210ENST00000544040 NLRP13Q86W25 1043 aa18.94■□□□□ 0.62
CHD4-210ENST00000544040 TERF2IPQ9NYB0 399 aa18.94■□□□□ 0.62
CHD4-210ENST00000544040 CHMP4AQ9BY43 222 aa18.94■□□□□ 0.62
CHD4-210ENST00000544040 ANO2Q9NQ90 1003 aa18.93■□□□□ 0.62
CHD4-210ENST00000544040 COG6Q9Y2V7 657 aa18.93■□□□□ 0.62
CHD4-210ENST00000544040 PDE3BQ13370 1112 aa18.93■□□□□ 0.62
CHD4-210ENST00000544040 LMOD3Q0VAK6 560 aa18.93■□□□□ 0.62
CHD4-210ENST00000544040 NGDNQ8NEJ9 315 aaKnown RBP18.92■□□□□ 0.62
CHD4-210ENST00000544040 NGEFQ8N5V2 710 aa18.92■□□□□ 0.62
CHD4-210ENST00000544040 DIAPH3Q9NSV4 1193 aa18.92■□□□□ 0.62
CHD4-210ENST00000544040 BICD2Q8TD16 824 aa18.92■□□□□ 0.62
CHD4-210ENST00000544040 SYNE3Q6ZMZ3 975 aa18.91■□□□□ 0.62
CHD4-210ENST00000544040 RRP1P56182 461 aaKnown RBP18.9■□□□□ 0.62
CHD4-210ENST00000544040 L3MBTL2Q969R5 705 aa18.9■□□□□ 0.62
CHD4-210ENST00000544040 IPO7O95373 1038 aaKnown RBP18.89■□□□□ 0.61
CHD4-210ENST00000544040 TRIM29Q14134 588 aa18.89■□□□□ 0.61
CHD4-210ENST00000544040 RRP12Q5JTH9 1297 aaKnown RBP18.89■□□□□ 0.61
CHD4-210ENST00000544040 NECTIN2Q92692 538 aa18.88■□□□□ 0.61
CHD4-210ENST00000544040 IFT57Q9NWB7 429 aa18.88■□□□□ 0.61
CHD4-210ENST00000544040 ZKSCAN2Q63HK3 967 aa18.87■□□□□ 0.61
CHD4-210ENST00000544040 NAP1L1P55209 391 aaKnown RBP18.87■□□□□ 0.61
CHD4-210ENST00000544040 TCEAL9Q9UHQ7 104 aa18.87■□□□□ 0.61
CHD4-210ENST00000544040 ERCC6Q03468 1493 aa18.87■□□□□ 0.61
CHD4-210ENST00000544040 SOGA1O94964 1423 aa18.86■□□□□ 0.61
CHD4-210ENST00000544040 FAM43AQ8N2R8 423 aa18.86■□□□□ 0.61
CHD4-210ENST00000544040 TRAK1Q9UPV9 953 aa18.86■□□□□ 0.61
CHD4-210ENST00000544040 CARMIL1Q5VZK9 1371 aa18.86■□□□□ 0.61
CHD4-210ENST00000544040 VPS37CA5D8V6 355 aaPredicted RBP18.86■□□□□ 0.61
CHD4-210ENST00000544040 PANK3Q9H999 370 aa18.86■□□□□ 0.61
CHD4-210ENST00000544040 APPP05067 770 aa18.86■□□□□ 0.61
CHD4-210ENST00000544040 MYBBP1AQ9BQG0 1328 aaKnown RBP18.85■□□□□ 0.61
CHD4-210ENST00000544040 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.85■□□□□ 0.61
CHD4-210ENST00000544040 RUFY1Q96T51 708 aa18.85■□□□□ 0.61
CHD4-210ENST00000544040 EIF2S2P20042 333 aaKnown RBP18.85■□□□□ 0.61
CHD4-210ENST00000544040 KIF15Q9NS87 1388 aa18.85■□□□□ 0.61
CHD4-210ENST00000544040 ANKRD20A12PQ8NF67 263 aa18.84■□□□□ 0.61
CHD4-210ENST00000544040 R3HCC1Q9Y3T6 440 aaKnown RBP18.84■□□□□ 0.61
CHD4-210ENST00000544040 CPLX1O14810 134 aa18.83■□□□□ 0.61
CHD4-210ENST00000544040 DHX16O60231 1041 aaKnown RBP18.83■□□□□ 0.61
CHD4-210ENST00000544040 SASS6Q6UVJ0 657 aa18.83■□□□□ 0.6
CHD4-210ENST00000544040 MNS1Q8NEH6 495 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms