RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 DNMBPQ6XZF7 1577 aa11.47□□□□□ -0.57
VPS13D-212ENST00000543766 ZNF513Q8N8E2 541 aaPredicted RBP11.46□□□□□ -0.57
VPS13D-212ENST00000543766 EP400NLQ6ZTU2 488 aa11.46□□□□□ -0.58
VPS13D-212ENST00000543766 RUSC2Q8N2Y8 1516 aa11.45□□□□□ -0.58
VPS13D-212ENST00000543766 CEP164Q9UPV0 1460 aa11.45□□□□□ -0.58
VPS13D-212ENST00000543766 PAK3O75914 559 aaPredicted RBP11.45□□□□□ -0.58
VPS13D-212ENST00000543766 NOL8Q76FK4 1167 aaKnown RBP11.45□□□□□ -0.58
VPS13D-212ENST00000543766 CLASP1Q7Z460 1538 aa11.45□□□□□ -0.58
VPS13D-212ENST00000543766 PPP4R3BQ5MIZ7 849 aa11.45□□□□□ -0.58
VPS13D-212ENST00000543766 SH3BP1Q9Y3L3 701 aa11.44□□□□□ -0.58
VPS13D-212ENST00000543766 WASHC2AQ641Q2 1341 aa11.44□□□□□ -0.58
VPS13D-212ENST00000543766 PDS5BQ9NTI5 1447 aa11.44□□□□□ -0.58
VPS13D-212ENST00000543766 GOLIM4O00461 696 aa11.44□□□□□ -0.58
VPS13D-212ENST00000543766 PDCL3Q9H2J4 239 aa11.44□□□□□ -0.58
VPS13D-212ENST00000543766 ABCA5Q8WWZ7 1642 aa11.43□□□□□ -0.58
VPS13D-212ENST00000543766 APBB1O00213 710 aa11.43□□□□□ -0.58
VPS13D-212ENST00000543766 BANK1Q8NDB2 785 aa11.43□□□□□ -0.58
VPS13D-212ENST00000543766 SHROOM2Q13796 1616 aa11.42□□□□□ -0.58
VPS13D-212ENST00000543766 ERICH3Q5RHP9 1530 aa11.42□□□□□ -0.58
VPS13D-212ENST00000543766 BRD1O95696 1058 aa11.42□□□□□ -0.58
VPS13D-212ENST00000543766 EIF4G3O43432 1585 aaKnown RBP11.42□□□□□ -0.58
VPS13D-212ENST00000543766 CUX1P39880 1505 aa11.42□□□□□ -0.58
VPS13D-212ENST00000543766 DDRGK1Q96HY6 314 aa11.41□□□□□ -0.58
VPS13D-212ENST00000543766 STK24Q9Y6E0 443 aa11.41□□□□□ -0.58
VPS13D-212ENST00000543766 HSP90AB4PQ58FF6 505 aa11.4□□□□□ -0.58
VPS13D-212ENST00000543766 CHD1O14646 1710 aa11.4□□□□□ -0.58
VPS13D-212ENST00000543766 CCER2I3L3R5 266 aa11.4□□□□□ -0.59
VPS13D-212ENST00000543766 WASHC2CQ9Y4E1 1318 aa11.39□□□□□ -0.59
VPS13D-212ENST00000543766 ANP32AP39687 249 aaKnown RBP11.39□□□□□ -0.59
VPS13D-212ENST00000543766 PBRM1Q86U86 1689 aa11.39□□□□□ -0.59
VPS13D-212ENST00000543766 SGSM3Q96HU1 749 aa11.39□□□□□ -0.59
VPS13D-212ENST00000543766 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.38□□□□□ -0.59
VPS13D-212ENST00000543766 MAFGO15525 162 aa11.38□□□□□ -0.59
VPS13D-212ENST00000543766 PRR29P0C7W0 189 aa11.38□□□□□ -0.59
VPS13D-212ENST00000543766 SMARCA5O60264 1052 aaPredicted RBP11.38□□□□□ -0.59
VPS13D-212ENST00000543766 TNNT1P13805 278 aa11.37□□□□□ -0.59
VPS13D-212ENST00000543766 FOSBP53539 338 aa11.37□□□□□ -0.59
VPS13D-212ENST00000543766 STK26Q9P289 416 aa11.37□□□□□ -0.59
VPS13D-212ENST00000543766 FANCD2Q9BXW9 1451 aa11.36□□□□□ -0.59
VPS13D-212ENST00000543766 PPP1R15AO75807 674 aaPredicted RBP11.36□□□□□ -0.59
VPS13D-212ENST00000543766 HNRNPUL2Q1KMD3 747 aaKnown RBP11.36□□□□□ -0.59
VPS13D-212ENST00000543766 CREBRFQ8IUR6 639 aa11.36□□□□□ -0.59
VPS13D-212ENST00000543766 IRF6O14896 467 aa11.36□□□□□ -0.59
VPS13D-212ENST00000543766 RALBP1Q15311 655 aa11.36□□□□□ -0.59
VPS13D-212ENST00000543766 TMX4Q9H1E5 349 aaPredicted RBP11.36□□□□□ -0.59
VPS13D-212ENST00000543766 MAPKBP1O60336 1514 aa11.36□□□□□ -0.59
VPS13D-212ENST00000543766 RBM26Q5T8P6 1007 aaKnown RBP11.35□□□□□ -0.59
VPS13D-212ENST00000543766 SPINK5Q9NQ38 1064 aaPredicted RBP11.35□□□□□ -0.59
VPS13D-212ENST00000543766 VPS8Q8N3P4 1428 aa11.35□□□□□ -0.59
VPS13D-212ENST00000543766 EGFL6Q8IUX8 553 aa11.34□□□□□ -0.59
VPS13D-212ENST00000543766 PRXQ9BXM0 1461 aa11.34□□□□□ -0.59
VPS13D-212ENST00000543766 ZNF500O60304 480 aaPredicted RBP11.34□□□□□ -0.59
VPS13D-212ENST00000543766 LMOD3Q0VAK6 560 aa11.34□□□□□ -0.59
VPS13D-212ENST00000543766 RIMBP3CA6NJZ7 1639 aa11.34□□□□□ -0.59
VPS13D-212ENST00000543766 RIMBP3BA6NNM3 1639 aa11.34□□□□□ -0.59
VPS13D-212ENST00000543766 RIMBP3Q9UFD9 1639 aa11.34□□□□□ -0.59
VPS13D-212ENST00000543766 NPM3O75607 178 aaKnown RBP11.33□□□□□ -0.6
VPS13D-212ENST00000543766 GSE1Q14687 1217 aa11.33□□□□□ -0.6
VPS13D-212ENST00000543766 CGNQ9P2M7 1197 aaKnown RBP11.33□□□□□ -0.6
VPS13D-212ENST00000543766 CLIP1P30622 1438 aa11.33□□□□□ -0.6
VPS13D-212ENST00000543766 CT47B1P0C2W7 299 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-212ENST00000543766 TRIM44Q96DX7 344 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-212ENST00000543766 TOPBP1Q92547 1522 aa11.32□□□□□ -0.6
VPS13D-212ENST00000543766 TMCO4Q5TGY1 634 aa11.32□□□□□ -0.6
VPS13D-212ENST00000543766 PPP1R1BQ9UD71 204 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-212ENST00000543766 IFT140Q96RY7 1462 aa11.31□□□□□ -0.6
VPS13D-212ENST00000543766 LOC102724159A0A0B4J2E5 919 aa11.31□□□□□ -0.6
VPS13D-212ENST00000543766 PWP2Q15269 919 aaKnown RBP11.31□□□□□ -0.6
VPS13D-212ENST00000543766 PEX14O75381 377 aa11.3□□□□□ -0.6
VPS13D-212ENST00000543766 NEUROD2Q15784 382 aa11.3□□□□□ -0.6
VPS13D-212ENST00000543766 CASC1Q6TDU7 716 aa11.3□□□□□ -0.6
VPS13D-212ENST00000543766 FAM13BQ9NYF5 915 aa11.3□□□□□ -0.6
VPS13D-212ENST00000543766 TNNT3P45378 269 aaPredicted RBP11.3□□□□□ -0.6
VPS13D-212ENST00000543766 HSP90AB3PQ58FF7 597 aa11.3□□□□□ -0.6
VPS13D-212ENST00000543766 EXOC8Q8IYI6 725 aa11.3□□□□□ -0.6
VPS13D-212ENST00000543766 TAF3Q5VWG9 929 aa11.3□□□□□ -0.6
VPS13D-212ENST00000543766 RAPGEF2Q9Y4G8 1499 aa11.29□□□□□ -0.6
VPS13D-212ENST00000543766 DHX16O60231 1041 aaKnown RBP11.29□□□□□ -0.6
VPS13D-212ENST00000543766 MFAP1P55081 439 aaKnown RBP11.29□□□□□ -0.6
VPS13D-212ENST00000543766 RINLQ6ZS11 566 aa11.29□□□□□ -0.6
VPS13D-212ENST00000543766 PSEN1P49768 467 aa11.29□□□□□ -0.6
VPS13D-212ENST00000543766 SSR1P43307 286 aaKnown RBP11.28□□□□□ -0.6
VPS13D-212ENST00000543766 RRBP1Q9P2E9 1410 aaKnown RBP11.28□□□□□ -0.6
VPS13D-212ENST00000543766 ERCC6Q03468 1493 aa11.28□□□□□ -0.6
VPS13D-212ENST00000543766 CARD10Q9BWT7 1032 aa11.28□□□□□ -0.6
VPS13D-212ENST00000543766 PPP4R2Q9NY27 417 aa11.28□□□□□ -0.6
VPS13D-212ENST00000543766 GZF1Q9H116 711 aaPredicted RBP11.27□□□□□ -0.6
VPS13D-212ENST00000543766 MMP14P50281 582 aa11.27□□□□□ -0.61
VPS13D-212ENST00000543766 APBB1IPQ7Z5R6 666 aaPredicted RBP11.27□□□□□ -0.61
VPS13D-212ENST00000543766 TTC36A6NLP5 189 aa11.27□□□□□ -0.61
VPS13D-212ENST00000543766 CCDC97Q96F63 343 aaPredicted RBP11.27□□□□□ -0.61
VPS13D-212ENST00000543766 TCERG1O14776 1098 aaKnown RBP11.26□□□□□ -0.61
VPS13D-212ENST00000543766 SPTY2D1Q68D10 685 aaPredicted RBP11.26□□□□□ -0.61
VPS13D-212ENST00000543766 KIF27Q86VH2 1401 aa11.26□□□□□ -0.61
VPS13D-212ENST00000543766 ATL2Q8NHH9 583 aa11.26□□□□□ -0.61
VPS13D-212ENST00000543766 MPHOSPH10O00566 681 aaKnown RBP11.25□□□□□ -0.61
VPS13D-212ENST00000543766 IPO9Q96P70 1041 aaKnown RBP11.25□□□□□ -0.61
VPS13D-212ENST00000543766 BRPF1P55201 1214 aaPredicted RBP11.25□□□□□ -0.61
VPS13D-212ENST00000543766 SMAP1Q8IYB5 467 aaPredicted RBP11.25□□□□□ -0.61
VPS13D-212ENST00000543766 FOXD4Q12950 439 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms