RNA–Protein interactions for RNA: ENST00000537824.2

CSMD1-215, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 13,512 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-215ENST00000537824 AK7Q96M32 723 aa6.97□□□□□ -1.29
CSMD1-215ENST00000537824 CRBNQ96SW2 442 aa6.97□□□□□ -1.29
CSMD1-215ENST00000537824 CCNB3Q8WWL7 1395 aa6.97□□□□□ -1.29
CSMD1-215ENST00000537824 PLCD4Q9BRC7 762 aa6.97□□□□□ -1.29
CSMD1-215ENST00000537824 SETD1BQ9UPS6 1966 aaKnown RBP6.97□□□□□ -1.29
CSMD1-215ENST00000537824 EXOC6Q8TAG9 804 aa6.97□□□□□ -1.29
CSMD1-215ENST00000537824 C14orf37Q86TY3 774 aa6.97□□□□□ -1.29
CSMD1-215ENST00000537824 H0YHG0 523 aa6.96□□□□□ -1.29
CSMD1-215ENST00000537824 MNS1Q8NEH6 495 aa6.96□□□□□ -1.29
CSMD1-215ENST00000537824 DEF6Q9H4E7 631 aa6.96□□□□□ -1.29
CSMD1-215ENST00000537824 CCDC191Q8NCU4 936 aa6.96□□□□□ -1.29
CSMD1-215ENST00000537824 PABPN1Q86U42 306 aaKnown RBP eCLIP6.96□□□□□ -1.3
CSMD1-215ENST00000537824 TSPYL1Q9H0U9 437 aa6.96□□□□□ -1.3
CSMD1-215ENST00000537824 TRIM6-TRIM34B2RNG4 842 aa6.96□□□□□ -1.3
CSMD1-215ENST00000537824 RSF1Q96T23 1441 aaPredicted RBP6.96□□□□□ -1.3
CSMD1-215ENST00000537824 CHMP5Q9NZZ3 219 aa6.96□□□□□ -1.3
CSMD1-215ENST00000537824 HMGN5P82970 282 aaKnown RBP6.95□□□□□ -1.3
CSMD1-215ENST00000537824 MYH9P35579 1960 aaKnown RBP6.95□□□□□ -1.3
CSMD1-215ENST00000537824 BECN2A8MW95 431 aa6.95□□□□□ -1.3
CSMD1-215ENST00000537824 RBM25P49756 843 aaKnown RBP6.95□□□□□ -1.3
CSMD1-215ENST00000537824 FBXW7Q969H0 707 aa6.95□□□□□ -1.3
CSMD1-215ENST00000537824 PLIN1O60240 522 aa6.95□□□□□ -1.3
CSMD1-215ENST00000537824 ZBED9Q6R2W3 1325 aa6.95□□□□□ -1.3
CSMD1-215ENST00000537824 RRP1P56182 461 aaKnown RBP6.95□□□□□ -1.3
CSMD1-215ENST00000537824 TPM1P09493 284 aa6.95□□□□□ -1.3
CSMD1-215ENST00000537824 HSP90B2PQ58FF3 399 aa6.95□□□□□ -1.3
CSMD1-215ENST00000537824 SETD5Q9C0A6 1442 aa6.95□□□□□ -1.3
CSMD1-215ENST00000537824 TSR1Q2NL82 804 aaKnown RBP6.95□□□□□ -1.3
CSMD1-215ENST00000537824 ACBD3Q9H3P7 528 aa6.94□□□□□ -1.3
CSMD1-215ENST00000537824 TPD52L1Q16890 204 aaPredicted RBP6.94□□□□□ -1.3
CSMD1-215ENST00000537824 MCTP1Q6DN14 999 aa6.94□□□□□ -1.3
CSMD1-215ENST00000537824 PLPPR3Q6T4P5 718 aa6.94□□□□□ -1.3
CSMD1-215ENST00000537824 CHMP3Q9Y3E7 222 aa6.94□□□□□ -1.3
CSMD1-215ENST00000537824 ESF1Q9H501 851 aaKnown RBP6.94□□□□□ -1.3
CSMD1-215ENST00000537824 TRAK2O60296 914 aa6.94□□□□□ -1.3
CSMD1-215ENST00000537824 SF3A1Q15459 793 aaKnown RBP6.94□□□□□ -1.3
CSMD1-215ENST00000537824 CCDC34Q96HJ3 373 aa6.94□□□□□ -1.3
CSMD1-215ENST00000537824 RUFY1Q96T51 708 aa6.94□□□□□ -1.3
CSMD1-215ENST00000537824 GORABQ5T7V8 394 aa6.94□□□□□ -1.3
CSMD1-215ENST00000537824 MPNDQ8N594 471 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 GPATCH3Q96I76 525 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 CCDC173Q0VFZ6 552 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 RALBP1Q15311 655 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 MORC1Q86VD1 984 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 BBXQ8WY36 941 aaPredicted RBP6.93□□□□□ -1.3
CSMD1-215ENST00000537824 CENPJQ9HC77 1338 aaPredicted RBP6.93□□□□□ -1.3
CSMD1-215ENST00000537824 RNF214Q8ND24 703 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 CGNQ9P2M7 1197 aaKnown RBP6.93□□□□□ -1.3
CSMD1-215ENST00000537824 E9PSI1 815 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 TSPY4P0CV99 314 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 TSPY10P0CW01 314 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 LEKR1Q6ZMV7 388 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 CHMP4AQ9BY43 222 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 TRERF1Q96PN7 1200 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 MYO9BQ13459 2157 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 NINQ8N4C6 2090 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 ESPNB1AK53 854 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 PES1O00541 588 aaKnown RBP6.93□□□□□ -1.3
CSMD1-215ENST00000537824 TNIKQ9UKE5 1360 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 STK11IPQ8N1F8 1099 aa6.93□□□□□ -1.3
CSMD1-215ENST00000537824 PDE3BQ13370 1112 aa6.92□□□□□ -1.3
CSMD1-215ENST00000537824 TCHHQ07283 1943 aa6.92□□□□□ -1.3
CSMD1-215ENST00000537824 ATP6V1DQ9Y5K8 247 aa6.92□□□□□ -1.3
CSMD1-215ENST00000537824 URB1O60287 2271 aaKnown RBP6.92□□□□□ -1.3
CSMD1-215ENST00000537824 NPHP1O15259 732 aa6.92□□□□□ -1.3
CSMD1-215ENST00000537824 CAVIN1Q6NZI2 390 aaKnown RBP6.92□□□□□ -1.3
CSMD1-215ENST00000537824 H3BQV1 296 aa6.92□□□□□ -1.3
CSMD1-215ENST00000537824 IFFO2Q5TF58 517 aa6.92□□□□□ -1.3
CSMD1-215ENST00000537824 ISY1Q9ULR0 285 aaKnown RBP6.92□□□□□ -1.3
CSMD1-215ENST00000537824 GPATCH11Q8N954 259 aa6.91□□□□□ -1.3
CSMD1-215ENST00000537824 SKIDA1Q1XH10 827 aa6.91□□□□□ -1.3
CSMD1-215ENST00000537824 SMC4Q9NTJ3 1288 aa6.91□□□□□ -1.3
CSMD1-215ENST00000537824 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.91□□□□□ -1.3
CSMD1-215ENST00000537824 HAP1P54257 671 aaPredicted RBP6.91□□□□□ -1.3
CSMD1-215ENST00000537824 CCDC146Q8IYE0 955 aa6.91□□□□□ -1.3
CSMD1-215ENST00000537824 KIAA0754O94854 1291 aa6.91□□□□□ -1.3
CSMD1-215ENST00000537824 GOLGA2Q08379 1002 aa6.91□□□□□ -1.3
CSMD1-215ENST00000537824 CLUAP1Q96AJ1 413 aa6.91□□□□□ -1.3
CSMD1-215ENST00000537824 MSH5O43196 834 aa6.91□□□□□ -1.3
CSMD1-215ENST00000537824 CEP164Q9UPV0 1460 aa6.9□□□□□ -1.3
CSMD1-215ENST00000537824 RASSF8Q8NHQ8 419 aa6.9□□□□□ -1.3
CSMD1-215ENST00000537824 TSPY26PQ9H489 355 aa6.9□□□□□ -1.3
CSMD1-215ENST00000537824 TMF1P82094 1093 aa6.9□□□□□ -1.3
CSMD1-215ENST00000537824 AXDND1Q5T1B0 1012 aaPredicted RBP6.9□□□□□ -1.31
CSMD1-215ENST00000537824 PRM3Q9NNZ6 103 aa6.9□□□□□ -1.31
CSMD1-215ENST00000537824 KIF3AQ9Y496 699 aa6.9□□□□□ -1.31
CSMD1-215ENST00000537824 C22orf23Q9BZE7 217 aa6.89□□□□□ -1.31
CSMD1-215ENST00000537824 IRX3P78415 501 aaPredicted RBP6.89□□□□□ -1.31
CSMD1-215ENST00000537824 PHLDB1Q86UU1 1377 aa6.89□□□□□ -1.31
CSMD1-215ENST00000537824 RAB3GAP2Q9H2M9 1393 aa6.89□□□□□ -1.31
CSMD1-215ENST00000537824 IPO4Q8TEX9 1081 aaKnown RBP6.89□□□□□ -1.31
CSMD1-215ENST00000537824 SPC24Q8NBT2 197 aa6.89□□□□□ -1.31
CSMD1-215ENST00000537824 CAGE1Q8TC20 777 aa6.89□□□□□ -1.31
CSMD1-215ENST00000537824 PDCL2Q8N4E4 241 aa6.89□□□□□ -1.31
CSMD1-215ENST00000537824 CENPHQ9H3R5 247 aa6.89□□□□□ -1.31
CSMD1-215ENST00000537824 USP8P40818 1118 aa6.88□□□□□ -1.31
CSMD1-215ENST00000537824 ZNF526Q8TF50 670 aaPredicted RBP6.88□□□□□ -1.31
CSMD1-215ENST00000537824 DIDO1Q9BTC0 2240 aaKnown RBP6.88□□□□□ -1.31
CSMD1-215ENST00000537824 PPP1R15AO75807 674 aaPredicted RBP6.88□□□□□ -1.31
CSMD1-215ENST00000537824 DCTN1Q14203 1278 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms