RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 BECN1Q14457 450 aa18.19■□□□□ 0.5
PCF11-204ENST00000530660 MRE11P49959 708 aa18.18■□□□□ 0.5
PCF11-204ENST00000530660 ZHX1Q9UKY1 873 aaPredicted RBP18.17■□□□□ 0.5
PCF11-204ENST00000530660 TCOF1Q13428 1488 aaKnown RBP18.17■□□□□ 0.5
PCF11-204ENST00000530660 TRIM44Q96DX7 344 aaPredicted RBP18.17■□□□□ 0.5
PCF11-204ENST00000530660 SLC4A1APQ9BWU0 796 aaKnown RBP18.17■□□□□ 0.5
PCF11-204ENST00000530660 BCORL1Q5H9F3 1711 aa18.16■□□□□ 0.5
PCF11-204ENST00000530660 GRPEL1Q9HAV7 217 aa18.16■□□□□ 0.5
PCF11-204ENST00000530660 ARHGEF11O15085 1522 aa18.16■□□□□ 0.5
PCF11-204ENST00000530660 BCL11BQ9C0K0 894 aaPredicted RBP18.16■□□□□ 0.5
PCF11-204ENST00000530660 MCM4P33991 863 aa18.16■□□□□ 0.5
PCF11-204ENST00000530660 USP47Q96K76 1375 aa18.16■□□□□ 0.5
PCF11-204ENST00000530660 FAM13BQ9NYF5 915 aa18.15■□□□□ 0.5
PCF11-204ENST00000530660 MIA2Q96PC5 1412 aa18.14■□□□□ 0.49
PCF11-204ENST00000530660 TRAK2O60296 914 aa18.14■□□□□ 0.49
PCF11-204ENST00000530660 RIPK4P57078 832 aa18.14■□□□□ 0.49
PCF11-204ENST00000530660 BRD4O60885 1362 aaPredicted RBP18.14■□□□□ 0.49
PCF11-204ENST00000530660 MYBBP1AQ9BQG0 1328 aaKnown RBP18.14■□□□□ 0.49
PCF11-204ENST00000530660 ARID3CA6NKF2 412 aa18.13■□□□□ 0.49
PCF11-204ENST00000530660 ABCA10Q8WWZ4 1543 aa18.12■□□□□ 0.49
PCF11-204ENST00000530660 PRDM10Q9NQV6 1147 aa18.12■□□□□ 0.49
PCF11-204ENST00000530660 SAMD9Q5K651 1589 aa18.11■□□□□ 0.49
PCF11-204ENST00000530660 CC2D2AQ9P2K1 1620 aa18.1■□□□□ 0.49
PCF11-204ENST00000530660 CUL7Q14999 1698 aa18.1■□□□□ 0.49
PCF11-204ENST00000530660 TBC1D2Q9BYX2 928 aa18.09■□□□□ 0.49
PCF11-204ENST00000530660 POLA1P09884 1462 aaPredicted RBP18.09■□□□□ 0.49
PCF11-204ENST00000530660 KIF15Q9NS87 1388 aa18.08■□□□□ 0.49
PCF11-204ENST00000530660 THOC2Q8NI27 1593 aaKnown RBP18.08■□□□□ 0.48
PCF11-204ENST00000530660 BBXQ8WY36 941 aaPredicted RBP18.08■□□□□ 0.48
PCF11-204ENST00000530660 FANCD2Q9BXW9 1451 aa18.06■□□□□ 0.48
PCF11-204ENST00000530660 GAS2L3Q86XJ1 694 aa18.05■□□□□ 0.48
PCF11-204ENST00000530660 RALBP1Q15311 655 aa18.04■□□□□ 0.48
PCF11-204ENST00000530660 ZNF644Q9H582 1327 aaPredicted RBP18.03■□□□□ 0.48
PCF11-204ENST00000530660 PDIA4P13667 645 aaKnown RBP18.02■□□□□ 0.48
PCF11-204ENST00000530660 SMAP1Q8IYB5 467 aaPredicted RBP18.02■□□□□ 0.48
PCF11-204ENST00000530660 NLRP13Q86W25 1043 aa18.02■□□□□ 0.48
PCF11-204ENST00000530660 DAPK1P53355 1430 aa18.02■□□□□ 0.47
PCF11-204ENST00000530660 OFD1O75665 1012 aa18.01■□□□□ 0.47
PCF11-204ENST00000530660 IGHDP01880 384 aa18.01■□□□□ 0.47
PCF11-204ENST00000530660 R3HCC1Q9Y3T6 440 aaKnown RBP18.01■□□□□ 0.47
PCF11-204ENST00000530660 MBD5Q9P267 1494 aa18.01■□□□□ 0.47
PCF11-204ENST00000530660 TOPBP1Q92547 1522 aa18.01■□□□□ 0.47
PCF11-204ENST00000530660 KDM5CP41229 1560 aa18.01■□□□□ 0.47
PCF11-204ENST00000530660 DNMBPQ6XZF7 1577 aa18.01■□□□□ 0.47
PCF11-204ENST00000530660 NLRP1Q9C000 1473 aa18.01■□□□□ 0.47
PCF11-204ENST00000530660 GTF2E1P29083 439 aaPredicted RBP18■□□□□ 0.47
PCF11-204ENST00000530660 ROCK2O75116 1388 aaKnown RBP18■□□□□ 0.47
PCF11-204ENST00000530660 CDK13Q14004 1512 aaKnown RBP18■□□□□ 0.47
PCF11-204ENST00000530660 TDRD9Q8NDG6 1382 aaKnown RBP17.99■□□□□ 0.47
PCF11-204ENST00000530660 CARD11Q9BXL7 1154 aa17.99■□□□□ 0.47
PCF11-204ENST00000530660 ABCC5O15440 1437 aa17.99■□□□□ 0.47
PCF11-204ENST00000530660 ROCK1Q13464 1354 aa17.98■□□□□ 0.47
PCF11-204ENST00000530660 VIRMAQ69YN4 1812 aaKnown RBP17.98■□□□□ 0.47
PCF11-204ENST00000530660 ST20-MTHFSA0A0A6YYL1 179 aa17.98■□□□□ 0.47
PCF11-204ENST00000530660 MAP7D2Q96T17 732 aa17.98■□□□□ 0.47
PCF11-204ENST00000530660 EPRSP07814 1512 aaKnown RBP17.97■□□□□ 0.47
PCF11-204ENST00000530660 PZPP20742 1482 aa17.97■□□□□ 0.47
PCF11-204ENST00000530660 CHMP4BQ9H444 224 aaKnown RBP17.96■□□□□ 0.47
PCF11-204ENST00000530660 ZSCAN30Q86W11 494 aa17.96■□□□□ 0.47
PCF11-204ENST00000530660 TBC1D32Q96NH3 1257 aa17.95■□□□□ 0.46
PCF11-204ENST00000530660 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.95■□□□□ 0.46
PCF11-204ENST00000530660 CHMP5Q9NZZ3 219 aa17.95■□□□□ 0.46
PCF11-204ENST00000530660 KIF14Q15058 1648 aa17.94■□□□□ 0.46
PCF11-204ENST00000530660 PKD2Q13563 968 aa17.94■□□□□ 0.46
PCF11-204ENST00000530660 STAC3Q96MF2 364 aa17.94■□□□□ 0.46
PCF11-204ENST00000530660 NAP1L2Q9ULW6 460 aaPredicted RBP17.94■□□□□ 0.46
PCF11-204ENST00000530660 UQCRHLA0A096LP55 91 aa17.94■□□□□ 0.46
PCF11-204ENST00000530660 UQCRHP07919 91 aa17.94■□□□□ 0.46
PCF11-204ENST00000530660 NESP48681 1621 aa17.93■□□□□ 0.46
PCF11-204ENST00000530660 MSNP26038 577 aaKnown RBP17.93■□□□□ 0.46
PCF11-204ENST00000530660 UPF2Q9HAU5 1272 aaKnown RBP17.93■□□□□ 0.46
PCF11-204ENST00000530660 DUSP27Q5VZP5 1158 aa17.93■□□□□ 0.46
PCF11-204ENST00000530660 KDM2AQ9Y2K7 1162 aa17.93■□□□□ 0.46
PCF11-204ENST00000530660 AEBP2Q6ZN18 517 aaPredicted RBP17.92■□□□□ 0.46
PCF11-204ENST00000530660 CC2D1BQ5T0F9 858 aaKnown RBP17.91■□□□□ 0.46
PCF11-204ENST00000530660 ISY1Q9ULR0 285 aaKnown RBP17.91■□□□□ 0.46
PCF11-204ENST00000530660 CANXP27824 592 aaKnown RBP17.9■□□□□ 0.46
PCF11-204ENST00000530660 DMTNQ08495 405 aa17.9■□□□□ 0.46
PCF11-204ENST00000530660 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.9■□□□□ 0.46
PCF11-204ENST00000530660 KIAA1107Q9UPP5 1409 aa17.9■□□□□ 0.46
PCF11-204ENST00000530660 DDX11L8A8MPP1 907 aa17.9■□□□□ 0.46
PCF11-204ENST00000530660 DNMT1P26358 1616 aaKnown RBP17.9■□□□□ 0.46
PCF11-204ENST00000530660 XPCQ01831 940 aaPredicted RBP17.89■□□□□ 0.45
PCF11-204ENST00000530660 ZSCAN20P17040 1043 aaPredicted RBP17.89■□□□□ 0.45
PCF11-204ENST00000530660 TERF1P54274 439 aa17.89■□□□□ 0.45
PCF11-204ENST00000530660 PARD3Q8TEW0 1356 aa17.88■□□□□ 0.45
PCF11-204ENST00000530660 BCAR3O75815 825 aa17.88■□□□□ 0.45
PCF11-204ENST00000530660 CCDC173Q0VFZ6 552 aa17.88■□□□□ 0.45
PCF11-204ENST00000530660 RALGAPBQ86X10 1494 aa17.88■□□□□ 0.45
PCF11-204ENST00000530660 KIF21AQ7Z4S6 1674 aa17.87■□□□□ 0.45
PCF11-204ENST00000530660 BLMP54132 1417 aaPredicted RBP17.87■□□□□ 0.45
PCF11-204ENST00000530660 MAPK8IP3Q9UPT6 1336 aa17.87■□□□□ 0.45
PCF11-204ENST00000530660 NASPP49321 788 aaPredicted RBP17.87■□□□□ 0.45
PCF11-204ENST00000530660 GAPVD1Q14C86 1478 aa17.86■□□□□ 0.45
PCF11-204ENST00000530660 ADAMTS8Q9UP79 889 aa17.86■□□□□ 0.45
PCF11-204ENST00000530660 PLEKHH1Q9ULM0 1364 aa17.86■□□□□ 0.45
PCF11-204ENST00000530660 PPP1R9BQ96SB3 815 aa17.86■□□□□ 0.45
PCF11-204ENST00000530660 UTP14CQ5TAP6 766 aaKnown RBP17.85■□□□□ 0.45
PCF11-204ENST00000530660 ZMYM4Q5VZL5 1548 aa17.85■□□□□ 0.45
PCF11-204ENST00000530660 PPP4R3BQ5MIZ7 849 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms