RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 FBXW7Q969H0 707 aa10.52□□□□□ -0.73
CD44-217ENST00000525348 EN1Q05925 392 aaPredicted RBP10.5□□□□□ -0.73
CD44-217ENST00000525348 SLC24A1O60721 1099 aa10.49□□□□□ -0.73
CD44-217ENST00000525348 COL9A1P20849 921 aa10.49□□□□□ -0.73
CD44-217ENST00000525348 PTPREP23469 700 aa10.49□□□□□ -0.73
CD44-217ENST00000525348 TSR1Q2NL82 804 aaKnown RBP10.49□□□□□ -0.73
CD44-217ENST00000525348 C6orf132Q5T0Z8 1188 aa10.48□□□□□ -0.73
CD44-217ENST00000525348 ANKRD13DQ6ZTN6 518 aa10.48□□□□□ -0.73
CD44-217ENST00000525348 SPNS2Q8IVW8 549 aa10.48□□□□□ -0.73
CD44-217ENST00000525348 TESPA1A2RU30 521 aaPredicted RBP10.47□□□□□ -0.73
CD44-217ENST00000525348 MAP3K7O43318 606 aa10.46□□□□□ -0.73
CD44-217ENST00000525348 ZBED2Q9BTP6 218 aa10.45□□□□□ -0.74
CD44-217ENST00000525348 CDHR5Q9HBB8 845 aa10.45□□□□□ -0.74
CD44-217ENST00000525348 PPP1R3GB7ZBB8 358 aa10.43□□□□□ -0.74
CD44-217ENST00000525348 ADGRD1Q6QNK2 874 aa10.43□□□□□ -0.74
CD44-217ENST00000525348 KCNH8Q96L42 1107 aa10.42□□□□□ -0.74
CD44-217ENST00000525348 VPS9D1Q9Y2B5 631 aa10.42□□□□□ -0.74
CD44-217ENST00000525348 TK2O00142 265 aa10.41□□□□□ -0.74
CD44-217ENST00000525348 PROX2Q3B8N5 592 aa10.41□□□□□ -0.74
CD44-217ENST00000525348 SLC4A5Q9BY07 1137 aa10.41□□□□□ -0.74
CD44-217ENST00000525348 HRO43593 1189 aa10.4□□□□□ -0.74
CD44-217ENST00000525348 NPDC1Q9NQX5 325 aaPredicted RBP10.39□□□□□ -0.75
CD44-217ENST00000525348 PLSCR2Q9NRY7 297 aa10.38□□□□□ -0.75
CD44-217ENST00000525348 MMRN1Q13201 1228 aa10.37□□□□□ -0.75
CD44-217ENST00000525348 RBM26Q5T8P6 1007 aaKnown RBP10.37□□□□□ -0.75
CD44-217ENST00000525348 FAM198AQ9UFP1 575 aa10.35□□□□□ -0.75
CD44-217ENST00000525348 BHMG1C9JSJ3 638 aaPredicted RBP10.34□□□□□ -0.75
CD44-217ENST00000525348 TSKSQ9UJT2 592 aa10.34□□□□□ -0.75
CD44-217ENST00000525348 TRIM6-TRIM34B2RNG4 842 aa10.33□□□□□ -0.76
CD44-217ENST00000525348 C3orf80F5H4A9 247 aa10.32□□□□□ -0.76
CD44-217ENST00000525348 CDCA7LQ96GN5 454 aa10.32□□□□□ -0.76
CD44-217ENST00000525348 MYT1LQ9UL68 1186 aa10.32□□□□□ -0.76
CD44-217ENST00000525348 NUTM2FA1L443 756 aa10.31□□□□□ -0.76
CD44-217ENST00000525348 PRSS12P56730 875 aa10.31□□□□□ -0.76
CD44-217ENST00000525348 PTGDRQ13258 359 aa10.31□□□□□ -0.76
CD44-217ENST00000525348 SMYD5Q6GMV2 418 aa10.31□□□□□ -0.76
CD44-217ENST00000525348 KIAA1468Q9P260 1216 aa10.31□□□□□ -0.76
CD44-217ENST00000525348 GPR37O15354 613 aa10.3□□□□□ -0.76
CD44-217ENST00000525348 CERKQ8TCT0 537 aa10.3□□□□□ -0.76
CD44-217ENST00000525348 RABGEF1Q9UJ41 708 aa10.3□□□□□ -0.76
CD44-217ENST00000525348 ONECUT3O60422 494 aaPredicted RBP10.29□□□□□ -0.76
CD44-217ENST00000525348 TTC13Q8NBP0 860 aa10.29□□□□□ -0.76
CD44-217ENST00000525348 PADI6Q6TGC4 694 aa10.28□□□□□ -0.76
CD44-217ENST00000525348 RNF166Q96A37 237 aaPredicted RBP10.27□□□□□ -0.77
CD44-217ENST00000525348 SEPT9Q9UHD8 586 aaPredicted RBP10.27□□□□□ -0.77
CD44-217ENST00000525348 RBM27Q9P2N5 1060 aaKnown RBP10.26□□□□□ -0.77
CD44-217ENST00000525348 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.25□□□□□ -0.77
CD44-217ENST00000525348 SMAPO00193 183 aa10.24□□□□□ -0.77
CD44-217ENST00000525348 FCHSD2O94868 740 aa10.24□□□□□ -0.77
CD44-217ENST00000525348 NBPF3Q9H094 633 aa10.24□□□□□ -0.77
CD44-217ENST00000525348 FECHP22830 423 aa10.23□□□□□ -0.77
CD44-217ENST00000525348 MRPL50Q8N5N7 158 aaKnown RBP10.23□□□□□ -0.77
CD44-217ENST00000525348 PACS2Q86VP3 889 aa10.22□□□□□ -0.77
CD44-217ENST00000525348 GPIHBP1Q8IV16 184 aa10.22□□□□□ -0.77
CD44-217ENST00000525348 TATDN2Q93075 761 aa10.21□□□□□ -0.77
CD44-217ENST00000525348 KCTD12Q96CX2 325 aaKnown RBP10.21□□□□□ -0.77
CD44-217ENST00000525348 STAC3Q96MF2 364 aa10.21□□□□□ -0.77
CD44-217ENST00000525348 PNMA3Q9UL41 463 aa10.21□□□□□ -0.77
CD44-217ENST00000525348 HIC1Q14526 733 aa10.2□□□□□ -0.78
CD44-217ENST00000525348 FAM161AQ3B820 660 aa10.2□□□□□ -0.78
CD44-217ENST00000525348 LMOD2Q6P5Q4 547 aa10.2□□□□□ -0.78
CD44-217ENST00000525348 NUDT18Q6ZVK8 323 aa10.2□□□□□ -0.78
CD44-217ENST00000525348 NBPF26B4DH59 902 aa10.19□□□□□ -0.78
CD44-217ENST00000525348 LAPTM4BQ86VI4 370 aa10.19□□□□□ -0.78
CD44-217ENST00000525348 TULP1O00294 542 aaPredicted RBP10.18□□□□□ -0.78
CD44-217ENST00000525348 GNPATO15228 680 aa10.18□□□□□ -0.78
CD44-217ENST00000525348 FAM98CQ17RN3 349 aaKnown RBP10.18□□□□□ -0.78
CD44-217ENST00000525348 ZFRQ96KR1 1074 aaKnown RBP10.17□□□□□ -0.78
CD44-217ENST00000525348 EYA1Q99502 592 aa10.17□□□□□ -0.78
CD44-217ENST00000525348 ADGRG1Q9Y653 693 aa10.17□□□□□ -0.78
CD44-217ENST00000525348 WNT2BQ93097 391 aa10.16□□□□□ -0.78
CD44-217ENST00000525348 GOLGA8CPA6NN73 597 aa10.15□□□□□ -0.78
CD44-217ENST00000525348 THSD4Q6ZMP0 1018 aa10.15□□□□□ -0.78
CD44-217ENST00000525348 BCAMP50895 628 aa10.13□□□□□ -0.79
CD44-217ENST00000525348 ANKK1Q8NFD2 765 aa10.12□□□□□ -0.79
CD44-217ENST00000525348 BCANQ96GW7 911 aa10.12□□□□□ -0.79
CD44-217ENST00000525348 SOWAHBA6NEL2 793 aa10.11□□□□□ -0.79
CD44-217ENST00000525348 SAMD7Q7Z3H4 446 aa10.11□□□□□ -0.79
CD44-217ENST00000525348 PTPN5P54829 565 aa10.1□□□□□ -0.79
CD44-217ENST00000525348 PXYLP1Q8TE99 480 aa10.09□□□□□ -0.79
CD44-217ENST00000525348 ZC3H15Q8WU90 426 aaKnown RBP10.09□□□□□ -0.79
CD44-217ENST00000525348 METTL3Q86U44 580 aaKnown RBP10.08□□□□□ -0.8
CD44-217ENST00000525348 RBM46Q8TBY0 533 aaKnown RBP10.08□□□□□ -0.8
CD44-217ENST00000525348 HCSTQ9UBK5 93 aa10.08□□□□□ -0.8
CD44-217ENST00000525348 RCCD1A6NED2 376 aa10.07□□□□□ -0.8
CD44-217ENST00000525348 MAP2K5Q13163 448 aa10.07□□□□□ -0.8
CD44-217ENST00000525348 SWT1Q5T5J6 900 aaKnown RBP10.07□□□□□ -0.8
CD44-217ENST00000525348 LRCH3Q96II8 777 aa10.07□□□□□ -0.8
CD44-217ENST00000525348 PHOX2BQ99453 314 aa10.07□□□□□ -0.8
CD44-217ENST00000525348 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.07□□□□□ -0.8
CD44-217ENST00000525348 NLRP7Q8WX94 980 aa10.06□□□□□ -0.8
CD44-217ENST00000525348 ZMYND10O75800 440 aa10.05□□□□□ -0.8
CD44-217ENST00000525348 DNAJB2P25686 324 aa10.05□□□□□ -0.8
CD44-217ENST00000525348 OATP04181 439 aa10.04□□□□□ -0.8
CD44-217ENST00000525348 TMEM134Q9H6X4 195 aa10.04□□□□□ -0.8
CD44-217ENST00000525348 WBP1LQ9NX94 342 aa10.04□□□□□ -0.8
CD44-217ENST00000525348 HPS5Q9UPZ3 1129 aa10.04□□□□□ -0.8
CD44-217ENST00000525348 IRF6O14896 467 aa10.03□□□□□ -0.8
CD44-217ENST00000525348 BARGINQ6ZT62 677 aa10.03□□□□□ -0.8
CD44-217ENST00000525348 CCDC102AQ96A19 550 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms