RNA–Protein interactions for RNA: ENST00000520062.1

HMGB1P46-201, Transcript of high mobility group box 1 pseudogene 46, humanhuman

BASIC

Gene HMGB1P46, Length 610 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P46-201ENST00000520062 KDM4FA0A1W2PPD8 638 aa10.34□□□□□ -0.75
HMGB1P46-201ENST00000520062 CLCN1P35523 988 aa10.34□□□□□ -0.75
HMGB1P46-201ENST00000520062 HOMEZQ8IX15 550 aa10.34□□□□□ -0.75
HMGB1P46-201ENST00000520062 ZMYND15Q9H091 742 aa10.34□□□□□ -0.75
HMGB1P46-201ENST00000520062 CERKQ8TCT0 537 aa10.33□□□□□ -0.76
HMGB1P46-201ENST00000520062 TMUB1Q9BVT8 246 aa10.33□□□□□ -0.76
HMGB1P46-201ENST00000520062 SUPT5HO00267 1087 aaKnown RBP10.32□□□□□ -0.76
HMGB1P46-201ENST00000520062 MS4A1P11836 297 aa10.31□□□□□ -0.76
HMGB1P46-201ENST00000520062 TSR1Q2NL82 804 aaKnown RBP10.31□□□□□ -0.76
HMGB1P46-201ENST00000520062 RBM33Q96EV2 1170 aaKnown RBP10.31□□□□□ -0.76
HMGB1P46-201ENST00000520062 GPCPD1Q9NPB8 672 aa10.31□□□□□ -0.76
HMGB1P46-201ENST00000520062 POTEHQ6S545 545 aa10.3□□□□□ -0.76
HMGB1P46-201ENST00000520062 FOSBP53539 338 aa10.29□□□□□ -0.76
HMGB1P46-201ENST00000520062 FLIIQ13045 1269 aa10.29□□□□□ -0.76
HMGB1P46-201ENST00000520062 REPIN1Q9BWE0 567 aaKnown RBP10.29□□□□□ -0.76
HMGB1P46-201ENST00000520062 RSPH6AQ9H0K4 717 aa10.29□□□□□ -0.76
HMGB1P46-201ENST00000520062 RBM27Q9P2N5 1060 aaKnown RBP10.29□□□□□ -0.76
HMGB1P46-201ENST00000520062 OATP04181 439 aa10.28□□□□□ -0.76
HMGB1P46-201ENST00000520062 SH3D19Q5HYK7 790 aa10.27□□□□□ -0.77
HMGB1P46-201ENST00000520062 PCMTD1Q96MG8 357 aaPredicted RBP10.27□□□□□ -0.77
HMGB1P46-201ENST00000520062 MDM2Q00987 491 aaPredicted RBP10.26□□□□□ -0.77
HMGB1P46-201ENST00000520062 C6orf132Q5T0Z8 1188 aa10.25□□□□□ -0.77
HMGB1P46-201ENST00000520062 METTL3Q86U44 580 aaKnown RBP10.25□□□□□ -0.77
HMGB1P46-201ENST00000520062 SP7Q8TDD2 431 aaPredicted RBP10.25□□□□□ -0.77
HMGB1P46-201ENST00000520062 ZDHHC16Q969W1 377 aa10.25□□□□□ -0.77
HMGB1P46-201ENST00000520062 PHOX2BQ99453 314 aa10.25□□□□□ -0.77
HMGB1P46-201ENST00000520062 ZSWIM6Q9HCJ5 1215 aa10.25□□□□□ -0.77
HMGB1P46-201ENST00000520062 DOK7Q18PE1 504 aa10.24□□□□□ -0.77
HMGB1P46-201ENST00000520062 TTC13Q8NBP0 860 aa10.24□□□□□ -0.77
HMGB1P46-201ENST00000520062 SSTR3P32745 418 aaPredicted RBP10.23□□□□□ -0.77
HMGB1P46-201ENST00000520062 ADGRG1Q9Y653 693 aa10.23□□□□□ -0.77
HMGB1P46-201ENST00000520062 ONECUT3O60422 494 aaPredicted RBP10.22□□□□□ -0.77
HMGB1P46-201ENST00000520062 PADI6Q6TGC4 694 aa10.22□□□□□ -0.77
HMGB1P46-201ENST00000520062 ZNF454Q8N9F8 522 aa10.22□□□□□ -0.77
HMGB1P46-201ENST00000520062 RIMBP2O15034 1052 aa10.21□□□□□ -0.77
HMGB1P46-201ENST00000520062 PXYLP1Q8TE99 480 aa10.21□□□□□ -0.77
HMGB1P46-201ENST00000520062 FAM217BQ9NTX9 383 aaPredicted RBP10.21□□□□□ -0.77
HMGB1P46-201ENST00000520062 SKIV2LQ15477 1246 aaKnown RBP10.2□□□□□ -0.78
HMGB1P46-201ENST00000520062 NUDT7P0C024 238 aa10.18□□□□□ -0.78
HMGB1P46-201ENST00000520062 HOXB3P14651 431 aaPredicted RBP10.18□□□□□ -0.78
HMGB1P46-201ENST00000520062 PRSS12P56730 875 aa10.18□□□□□ -0.78
HMGB1P46-201ENST00000520062 BEGAINQ9BUH8 593 aa10.18□□□□□ -0.78
HMGB1P46-201ENST00000520062 ADAM33Q9BZ11 813 aa10.18□□□□□ -0.78
HMGB1P46-201ENST00000520062 PSDA5PKW4 1024 aaPredicted RBP10.16□□□□□ -0.78
HMGB1P46-201ENST00000520062 FAM161AQ3B820 660 aa10.16□□□□□ -0.78
HMGB1P46-201ENST00000520062 ARSIQ5FYB1 569 aa10.16□□□□□ -0.78
HMGB1P46-201ENST00000520062 GPR153Q6NV75 609 aa10.16□□□□□ -0.78
HMGB1P46-201ENST00000520062 RBM46Q8TBY0 533 aaKnown RBP10.16□□□□□ -0.78
HMGB1P46-201ENST00000520062 CDCA7LQ96GN5 454 aa10.15□□□□□ -0.78
HMGB1P46-201ENST00000520062 DIXDC1Q155Q3 683 aa10.14□□□□□ -0.79
HMGB1P46-201ENST00000520062 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.13□□□□□ -0.79
HMGB1P46-201ENST00000520062 A6NJR5 290 aa10.13□□□□□ -0.79
HMGB1P46-201ENST00000520062 PPP4R3BQ5MIZ7 849 aa10.12□□□□□ -0.79
HMGB1P46-201ENST00000520062 KHSRPQ92945 711 aaKnown RBP eCLIP10.12□□□□□ -0.79
HMGB1P46-201ENST00000520062 POTEJP0CG39 1038 aa10.11□□□□□ -0.79
HMGB1P46-201ENST00000520062 MCM6Q14566 821 aa10.11□□□□□ -0.79
HMGB1P46-201ENST00000520062 MAMSTRQ6ZN01 415 aa10.11□□□□□ -0.79
HMGB1P46-201ENST00000520062 ZNF710Q8N1W2 664 aa10.11□□□□□ -0.79
HMGB1P46-201ENST00000520062 BCL2L12Q9HB09 334 aa10.11□□□□□ -0.79
HMGB1P46-201ENST00000520062 MYSM1Q5VVJ2 828 aa10.1□□□□□ -0.79
HMGB1P46-201ENST00000520062 NLRP7Q8WX94 980 aa10.1□□□□□ -0.79
HMGB1P46-201ENST00000520062 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.1□□□□□ -0.79
HMGB1P46-201ENST00000520062 SCUBE2Q9NQ36 999 aa10.1□□□□□ -0.79
HMGB1P46-201ENST00000520062 LHX6Q9UPM6 363 aa10.09□□□□□ -0.79
HMGB1P46-201ENST00000520062 PPP1R3GB7ZBB8 358 aa10.08□□□□□ -0.8
HMGB1P46-201ENST00000520062 UBTFP17480 764 aaKnown RBP10.08□□□□□ -0.8
HMGB1P46-201ENST00000520062 CLK2P49760 499 aaKnown RBP10.08□□□□□ -0.8
HMGB1P46-201ENST00000520062 EYA1Q99502 592 aa10.08□□□□□ -0.8
HMGB1P46-201ENST00000520062 PROCA1Q8NCQ7 364 aaPredicted RBP10.07□□□□□ -0.8
HMGB1P46-201ENST00000520062 TBC1D2Q9BYX2 928 aa10.07□□□□□ -0.8
HMGB1P46-201ENST00000520062 POLR3EQ9NVU0 708 aa10.07□□□□□ -0.8
HMGB1P46-201ENST00000520062 RCCD1A6NED2 376 aa10.06□□□□□ -0.8
HMGB1P46-201ENST00000520062 COL9A1P20849 921 aa10.06□□□□□ -0.8
HMGB1P46-201ENST00000520062 PTPREP23469 700 aa10.06□□□□□ -0.8
HMGB1P46-201ENST00000520062 SULF1Q8IWU6 871 aa10.06□□□□□ -0.8
HMGB1P46-201ENST00000520062 FAM198AQ9UFP1 575 aa10.06□□□□□ -0.8
HMGB1P46-201ENST00000520062 C1orf115Q9H7X2 142 aa10.05□□□□□ -0.8
HMGB1P46-201ENST00000520062 NBPF26B4DH59 902 aa10.04□□□□□ -0.8
HMGB1P46-201ENST00000520062 POTEB2H3BUK9 544 aa10.04□□□□□ -0.8
HMGB1P46-201ENST00000520062 TRAK2O60296 914 aa10.04□□□□□ -0.8
HMGB1P46-201ENST00000520062 TUSC1Q2TAM9 212 aa10.04□□□□□ -0.8
HMGB1P46-201ENST00000520062 BANK1Q8NDB2 785 aa10.04□□□□□ -0.8
HMGB1P46-201ENST00000520062 ATP1B4Q9UN42 357 aaPredicted RBP10.04□□□□□ -0.8
HMGB1P46-201ENST00000520062 SPDYE5A6NIY4 337 aa10.03□□□□□ -0.8
HMGB1P46-201ENST00000520062 SNPHO15079 494 aa10.03□□□□□ -0.8
HMGB1P46-201ENST00000520062 CD46P15529 392 aa10.03□□□□□ -0.8
HMGB1P46-201ENST00000520062 DNAJB2P25686 324 aa10.03□□□□□ -0.8
HMGB1P46-201ENST00000520062 CLUAP1Q96AJ1 413 aa10.03□□□□□ -0.8
HMGB1P46-201ENST00000520062 TSKSQ9UJT2 592 aa10.03□□□□□ -0.8
HMGB1P46-201ENST00000520062 APBB1O00213 710 aa10.02□□□□□ -0.81
HMGB1P46-201ENST00000520062 TRIM6-TRIM34B2RNG4 842 aa10.01□□□□□ -0.81
HMGB1P46-201ENST00000520062 HOXB1P14653 301 aaPredicted RBP10.01□□□□□ -0.81
HMGB1P46-201ENST00000520062 GJA5P36382 358 aa10.01□□□□□ -0.81
HMGB1P46-201ENST00000520062 PPP2R2DQ66LE6 453 aa10.01□□□□□ -0.81
HMGB1P46-201ENST00000520062 PACS2Q86VP3 889 aa10.01□□□□□ -0.81
HMGB1P46-201ENST00000520062 SPIRE2Q8WWL2 714 aa10.01□□□□□ -0.81
HMGB1P46-201ENST00000520062 RFC5P40937 340 aa10□□□□□ -0.81
HMGB1P46-201ENST00000520062 TMEM259Q4ZIN3 620 aa10□□□□□ -0.81
HMGB1P46-201ENST00000520062 NUDT18Q6ZVK8 323 aa10□□□□□ -0.81
HMGB1P46-201ENST00000520062 TATDN2Q93075 761 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms