RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	PSEN2	P49810	448 aa		10.85	□□□□□ -0.67
MATR3-223	ENST00000514402	GRXCR2	A6NFK2	248 aa		10.84	□□□□□ -0.67
MATR3-223	ENST00000514402	PPP1R3G	B7ZBB8	358 aa		10.84	□□□□□ -0.67
MATR3-223	ENST00000514402	MMRN1	Q13201	1228 aa		10.84	□□□□□ -0.67
MATR3-223	ENST00000514402	OSBP	P22059	807 aa		10.82	□□□□□ -0.68
MATR3-223	ENST00000514402	C6orf132	Q5T0Z8	1188 aa		10.82	□□□□□ -0.68
MATR3-223	ENST00000514402	ANKRD13D	Q6ZTN6	518 aa		10.82	□□□□□ -0.68
MATR3-223	ENST00000514402	DMRTA1	Q5VZB9	504 aa		10.81	□□□□□ -0.68
MATR3-223	ENST00000514402	ADGRD1	Q6QNK2	874 aa		10.81	□□□□□ -0.68
MATR3-223	ENST00000514402	MAP3K7	O43318	606 aa		10.8	□□□□□ -0.68
MATR3-223	ENST00000514402	CERK	Q8TCT0	537 aa		10.8	□□□□□ -0.68
MATR3-223	ENST00000514402	SMYD5	Q6GMV2	418 aa		10.79	□□□□□ -0.68
MATR3-223	ENST00000514402	RBM33	Q96EV2	1170 aa	Known RBP	10.79	□□□□□ -0.68
MATR3-223	ENST00000514402	ZBED2	Q9BTP6	218 aa		10.79	□□□□□ -0.68
MATR3-223	ENST00000514402	TESPA1	A2RU30	521 aa	Predicted RBP	10.78	□□□□□ -0.68
MATR3-223	ENST00000514402	SEMA3E	O15041	775 aa		10.78	□□□□□ -0.68
MATR3-223	ENST00000514402	MLLT3	P42568	568 aa	Predicted RBP	10.78	□□□□□ -0.68
MATR3-223	ENST00000514402	ONECUT3	O60422	494 aa	Predicted RBP	10.77	□□□□□ -0.69
MATR3-223	ENST00000514402	VPS9D1	Q9Y2B5	631 aa		10.76	□□□□□ -0.69
MATR3-223	ENST00000514402	HR	O43593	1189 aa		10.75	□□□□□ -0.69
MATR3-223	ENST00000514402	SLC24A1	O60721	1099 aa		10.75	□□□□□ -0.69
MATR3-223	ENST00000514402	COL9A1	P20849	921 aa		10.75	□□□□□ -0.69
MATR3-223	ENST00000514402	TSR1	Q2NL82	804 aa	Known RBP	10.74	□□□□□ -0.69
MATR3-223	ENST00000514402	PRIM1	P49642	420 aa	Known RBP	10.73	□□□□□ -0.69
MATR3-223	ENST00000514402	RBM27	Q9P2N5	1060 aa	Known RBP	10.72	□□□□□ -0.69
MATR3-223	ENST00000514402	RABGEF1	Q9UJ41	708 aa		10.72	□□□□□ -0.69
MATR3-223	ENST00000514402	MYT1L	Q9UL68	1186 aa		10.72	□□□□□ -0.69
MATR3-223	ENST00000514402	NBPF3	Q9H094	633 aa		10.71	□□□□□ -0.69
MATR3-223	ENST00000514402	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.7	□□□□□ -0.7
MATR3-223	ENST00000514402	STAC3	Q96MF2	364 aa		10.7	□□□□□ -0.7
MATR3-223	ENST00000514402	TRIM6-TRIM34	B2RNG4	842 aa		10.69	□□□□□ -0.7
MATR3-223	ENST00000514402	TULP1	O00294	542 aa	Predicted RBP	10.69	□□□□□ -0.7
MATR3-223	ENST00000514402	PRSS12	P56730	875 aa		10.67	□□□□□ -0.7
MATR3-223	ENST00000514402	PROX2	Q3B8N5	592 aa		10.67	□□□□□ -0.7
MATR3-223	ENST00000514402	RNF166	Q96A37	237 aa	Predicted RBP	10.67	□□□□□ -0.7
MATR3-223	ENST00000514402	CDHR5	Q9HBB8	845 aa		10.67	□□□□□ -0.7
MATR3-223	ENST00000514402	LAPTM4B	Q86VI4	370 aa		10.65	□□□□□ -0.7
MATR3-223	ENST00000514402	MRPL50	Q8N5N7	158 aa	Known RBP	10.65	□□□□□ -0.7
MATR3-223	ENST00000514402	CDCA7L	Q96GN5	454 aa		10.65	□□□□□ -0.7
MATR3-223	ENST00000514402	NPDC1	Q9NQX5	325 aa	Predicted RBP	10.65	□□□□□ -0.7
MATR3-223	ENST00000514402	PTGDR	Q13258	359 aa		10.64	□□□□□ -0.71
MATR3-223	ENST00000514402	PACS2	Q86VP3	889 aa		10.64	□□□□□ -0.71
MATR3-223	ENST00000514402	KIAA1468	Q9P260	1216 aa		10.63	□□□□□ -0.71
MATR3-223	ENST00000514402	NUTM2F	A1L443	756 aa		10.62	□□□□□ -0.71
MATR3-223	ENST00000514402	FCHSD2	O94868	740 aa		10.62	□□□□□ -0.71
MATR3-223	ENST00000514402	TSKS	Q9UJT2	592 aa		10.62	□□□□□ -0.71
MATR3-223	ENST00000514402	TTC13	Q8NBP0	860 aa		10.61	□□□□□ -0.71
MATR3-223	ENST00000514402	NBPF26	B4DH59	902 aa		10.6	□□□□□ -0.71
MATR3-223	ENST00000514402	RBM26	Q5T8P6	1007 aa	Known RBP	10.6	□□□□□ -0.71
MATR3-223	ENST00000514402	GOLGA8CP	A6NN73	597 aa		10.59	□□□□□ -0.71
MATR3-223	ENST00000514402	HIC1	Q14526	733 aa		10.58	□□□□□ -0.72
MATR3-223	ENST00000514402	FAM98C	Q17RN3	349 aa	Known RBP	10.58	□□□□□ -0.72
MATR3-223	ENST00000514402	PADI6	Q6TGC4	694 aa		10.57	□□□□□ -0.72
MATR3-223	ENST00000514402	GPIHBP1	Q8IV16	184 aa		10.56	□□□□□ -0.72
MATR3-223	ENST00000514402	FAM198A	Q9UFP1	575 aa		10.56	□□□□□ -0.72
MATR3-223	ENST00000514402	TATDN2	Q93075	761 aa		10.55	□□□□□ -0.72
MATR3-223	ENST00000514402	WNT2B	Q93097	391 aa		10.54	□□□□□ -0.72
MATR3-223	ENST00000514402	GPR37	O15354	613 aa		10.53	□□□□□ -0.72
MATR3-223	ENST00000514402	ANKK1	Q8NFD2	765 aa		10.53	□□□□□ -0.72
MATR3-223	ENST00000514402	KCTD12	Q96CX2	325 aa	Known RBP	10.53	□□□□□ -0.72
MATR3-223	ENST00000514402	ZFR	Q96KR1	1074 aa	Known RBP	10.53	□□□□□ -0.72
MATR3-223	ENST00000514402	HCST	Q9UBK5	93 aa		10.53	□□□□□ -0.72
MATR3-223	ENST00000514402	SEPT9	Q9UHD8	586 aa	Predicted RBP	10.53	□□□□□ -0.72
MATR3-223	ENST00000514402	PNMA3	Q9UL41	463 aa		10.53	□□□□□ -0.72
MATR3-223	ENST00000514402	GNPAT	O15228	680 aa		10.52	□□□□□ -0.73
MATR3-223	ENST00000514402	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	10.52	□□□□□ -0.73
MATR3-223	ENST00000514402	THSD4	Q6ZMP0	1018 aa		10.51	□□□□□ -0.73
MATR3-223	ENST00000514402	NUDT18	Q6ZVK8	323 aa		10.51	□□□□□ -0.73
MATR3-223	ENST00000514402	RBM46	Q8TBY0	533 aa	Known RBP	10.49	□□□□□ -0.73
MATR3-223	ENST00000514402	SOWAHB	A6NEL2	793 aa		10.48	□□□□□ -0.73
MATR3-223	ENST00000514402	LMOD2	Q6P5Q4	547 aa		10.48	□□□□□ -0.73
MATR3-223	ENST00000514402	EYA1	Q99502	592 aa		10.48	□□□□□ -0.73
MATR3-223	ENST00000514402	HDGF	P51858	240 aa	Known RBP	10.47	□□□□□ -0.73
MATR3-223	ENST00000514402	BCAN	Q96GW7	911 aa		10.47	□□□□□ -0.73
MATR3-223	ENST00000514402	LRCH3	Q96II8	777 aa		10.47	□□□□□ -0.73
MATR3-223	ENST00000514402	ADGRG1	Q9Y653	693 aa		10.47	□□□□□ -0.73
MATR3-223	ENST00000514402	C3orf80	F5H4A9	247 aa		10.46	□□□□□ -0.73
MATR3-223	ENST00000514402	SMAP	O00193	183 aa		10.46	□□□□□ -0.73
MATR3-223	ENST00000514402	OAT	P04181	439 aa		10.46	□□□□□ -0.73
MATR3-223	ENST00000514402	NYAP1	Q6ZVC0	841 aa		10.46	□□□□□ -0.73
MATR3-223	ENST00000514402	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	10.46	□□□□□ -0.73
MATR3-223	ENST00000514402	NECTIN2	Q92692	538 aa		10.44	□□□□□ -0.74
MATR3-223	ENST00000514402	DNAJB2	P25686	324 aa		10.43	□□□□□ -0.74
MATR3-223	ENST00000514402	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.42	□□□□□ -0.74
MATR3-223	ENST00000514402	SLC4A3	P48751	1232 aa		10.42	□□□□□ -0.74
MATR3-223	ENST00000514402	PXYLP1	Q8TE99	480 aa		10.42	□□□□□ -0.74
MATR3-223	ENST00000514402	TSR3	Q9UJK0	312 aa	Known RBP	10.42	□□□□□ -0.74
MATR3-223	ENST00000514402	BCAM	P50895	628 aa		10.41	□□□□□ -0.74
MATR3-223	ENST00000514402	MAP2K5	Q13163	448 aa		10.41	□□□□□ -0.74
MATR3-223	ENST00000514402	SAMD7	Q7Z3H4	446 aa		10.41	□□□□□ -0.74
MATR3-223	ENST00000514402	FECH	P22830	423 aa		10.4	□□□□□ -0.74
MATR3-223	ENST00000514402	PTPN5	P54829	565 aa		10.4	□□□□□ -0.74
MATR3-223	ENST00000514402	METTL3	Q86U44	580 aa	Known RBP	10.4	□□□□□ -0.74
MATR3-223	ENST00000514402	SLF2	Q8IX21	1173 aa		10.4	□□□□□ -0.74
MATR3-223	ENST00000514402	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.38	□□□□□ -0.75
MATR3-223	ENST00000514402	RCCD1	A6NED2	376 aa		10.38	□□□□□ -0.75
MATR3-223	ENST00000514402	TMEM134	Q9H6X4	195 aa		10.38	□□□□□ -0.75
MATR3-223	ENST00000514402	SWT1	Q5T5J6	900 aa	Known RBP	10.37	□□□□□ -0.75
MATR3-223	ENST00000514402	HPS5	Q9UPZ3	1129 aa		10.37	□□□□□ -0.75
MATR3-223	ENST00000514402	PPP4C	P60510	307 aa		10.36	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms