RNA–Protein interactions for RNA: ENST00000486427.1

LTN1-206, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 2

Gene LTN1, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-206ENST00000486427 KCNK17Q96T54 332 aa13.32□□□□□ -0.28
LTN1-206ENST00000486427 ARHGAP33O14559 1287 aa13.31□□□□□ -0.28
LTN1-206ENST00000486427 PBX2P40425 430 aa13.31□□□□□ -0.28
LTN1-206ENST00000486427 MMRN1Q13201 1228 aa13.31□□□□□ -0.28
LTN1-206ENST00000486427 TSR1Q2NL82 804 aaKnown RBP13.29□□□□□ -0.28
LTN1-206ENST00000486427 MAP3K7O43318 606 aa13.28□□□□□ -0.28
LTN1-206ENST00000486427 PTPREP23469 700 aa13.28□□□□□ -0.28
LTN1-206ENST00000486427 C6orf132Q5T0Z8 1188 aa13.28□□□□□ -0.28
LTN1-206ENST00000486427 DMRTA1Q5VZB9 504 aa13.28□□□□□ -0.28
LTN1-206ENST00000486427 SPNS2Q8IVW8 549 aa13.28□□□□□ -0.28
LTN1-206ENST00000486427 COL9A1P20849 921 aa13.26□□□□□ -0.29
LTN1-206ENST00000486427 LSM11P83369 360 aaKnown RBP eCLIP13.25□□□□□ -0.29
LTN1-206ENST00000486427 CDHR5Q9HBB8 845 aa13.25□□□□□ -0.29
LTN1-206ENST00000486427 RBM26Q5T8P6 1007 aaKnown RBP13.23□□□□□ -0.29
LTN1-206ENST00000486427 SMYD5Q6GMV2 418 aa13.22□□□□□ -0.29
LTN1-206ENST00000486427 PPP1R3GB7ZBB8 358 aa13.21□□□□□ -0.29
LTN1-206ENST00000486427 KCNH8Q96L42 1107 aa13.21□□□□□ -0.29
LTN1-206ENST00000486427 ANKRD13DQ6ZTN6 518 aa13.2□□□□□ -0.3
LTN1-206ENST00000486427 ZBED2Q9BTP6 218 aa13.18□□□□□ -0.3
LTN1-206ENST00000486427 NPDC1Q9NQX5 325 aaPredicted RBP13.17□□□□□ -0.3
LTN1-206ENST00000486427 NUTM2FA1L443 756 aa13.15□□□□□ -0.3
LTN1-206ENST00000486427 PROX2Q3B8N5 592 aa13.15□□□□□ -0.3
LTN1-206ENST00000486427 ADGRD1Q6QNK2 874 aa13.15□□□□□ -0.3
LTN1-206ENST00000486427 VPS9D1Q9Y2B5 631 aa13.14□□□□□ -0.31
LTN1-206ENST00000486427 TK2O00142 265 aa13.13□□□□□ -0.31
LTN1-206ENST00000486427 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.13□□□□□ -0.31
LTN1-206ENST00000486427 SLC4A5Q9BY07 1137 aa13.13□□□□□ -0.31
LTN1-206ENST00000486427 BCANQ96GW7 911 aa13.12□□□□□ -0.31
LTN1-206ENST00000486427 PTGDRQ13258 359 aa13.11□□□□□ -0.31
LTN1-206ENST00000486427 TULP1O00294 542 aaPredicted RBP13.1□□□□□ -0.31
LTN1-206ENST00000486427 CERKQ8TCT0 537 aa13.1□□□□□ -0.31
LTN1-206ENST00000486427 GPR37O15354 613 aa13.09□□□□□ -0.31
LTN1-206ENST00000486427 HRO43593 1189 aa13.09□□□□□ -0.31
LTN1-206ENST00000486427 PRSS12P56730 875 aa13.09□□□□□ -0.31
LTN1-206ENST00000486427 LMOD2Q6P5Q4 547 aa13.09□□□□□ -0.31
LTN1-206ENST00000486427 FAM198AQ9UFP1 575 aa13.09□□□□□ -0.31
LTN1-206ENST00000486427 CDCA7LQ96GN5 454 aa13.08□□□□□ -0.32
LTN1-206ENST00000486427 TSKSQ9UJT2 592 aa13.08□□□□□ -0.32
LTN1-206ENST00000486427 TRIM6-TRIM34B2RNG4 842 aa13.07□□□□□ -0.32
LTN1-206ENST00000486427 FCHSD2O94868 740 aa13.06□□□□□ -0.32
LTN1-206ENST00000486427 GPIHBP1Q8IV16 184 aa13.06□□□□□ -0.32
LTN1-206ENST00000486427 PADI6Q6TGC4 694 aa13.05□□□□□ -0.32
LTN1-206ENST00000486427 KIAA1468Q9P260 1216 aa13.05□□□□□ -0.32
LTN1-206ENST00000486427 BHMG1C9JSJ3 638 aaPredicted RBP13.04□□□□□ -0.32
LTN1-206ENST00000486427 C3orf80F5H4A9 247 aa13.03□□□□□ -0.32
LTN1-206ENST00000486427 ONECUT3O60422 494 aaPredicted RBP13.03□□□□□ -0.32
LTN1-206ENST00000486427 TTC13Q8NBP0 860 aa13.03□□□□□ -0.32
LTN1-206ENST00000486427 RABGEF1Q9UJ41 708 aa13.03□□□□□ -0.32
LTN1-206ENST00000486427 RBM27Q9P2N5 1060 aaKnown RBP13.02□□□□□ -0.33
LTN1-206ENST00000486427 FECHP22830 423 aa13□□□□□ -0.33
LTN1-206ENST00000486427 HIC1Q14526 733 aa12.99□□□□□ -0.33
LTN1-206ENST00000486427 PACS2Q86VP3 889 aa12.98□□□□□ -0.33
LTN1-206ENST00000486427 GNPATO15228 680 aa12.97□□□□□ -0.33
LTN1-206ENST00000486427 SEPT9Q9UHD8 586 aaPredicted RBP12.97□□□□□ -0.33
LTN1-206ENST00000486427 SMAPO00193 183 aa12.96□□□□□ -0.33
LTN1-206ENST00000486427 NBPF3Q9H094 633 aa12.96□□□□□ -0.33
LTN1-206ENST00000486427 MRPL50Q8N5N7 158 aaKnown RBP12.95□□□□□ -0.34
LTN1-206ENST00000486427 MYT1LQ9UL68 1186 aa12.95□□□□□ -0.34
LTN1-206ENST00000486427 FAM161AQ3B820 660 aa12.94□□□□□ -0.34
LTN1-206ENST00000486427 ZC3H15Q8WU90 426 aaKnown RBP12.94□□□□□ -0.34
LTN1-206ENST00000486427 TATDN2Q93075 761 aa12.94□□□□□ -0.34
LTN1-206ENST00000486427 PNMA3Q9UL41 463 aa12.94□□□□□ -0.34
LTN1-206ENST00000486427 NUDT18Q6ZVK8 323 aa12.93□□□□□ -0.34
LTN1-206ENST00000486427 STAC3Q96MF2 364 aa12.93□□□□□ -0.34
LTN1-206ENST00000486427 NBPF26B4DH59 902 aa12.92□□□□□ -0.34
LTN1-206ENST00000486427 ADGRG1Q9Y653 693 aa12.92□□□□□ -0.34
LTN1-206ENST00000486427 LAPTM4BQ86VI4 370 aa12.9□□□□□ -0.34
LTN1-206ENST00000486427 FAM98CQ17RN3 349 aaKnown RBP12.89□□□□□ -0.35
LTN1-206ENST00000486427 EYA1Q99502 592 aa12.89□□□□□ -0.35
LTN1-206ENST00000486427 RNF166Q96A37 237 aaPredicted RBP12.88□□□□□ -0.35
LTN1-206ENST00000486427 ZMYND10O75800 440 aa12.87□□□□□ -0.35
LTN1-206ENST00000486427 ZFRQ96KR1 1074 aaKnown RBP12.87□□□□□ -0.35
LTN1-206ENST00000486427 GOLGA8CPA6NN73 597 aa12.85□□□□□ -0.35
LTN1-206ENST00000486427 KCTD12Q96CX2 325 aaKnown RBP12.85□□□□□ -0.35
LTN1-206ENST00000486427 MAP2K5Q13163 448 aa12.84□□□□□ -0.35
LTN1-206ENST00000486427 BARGINQ6ZT62 677 aa12.84□□□□□ -0.35
LTN1-206ENST00000486427 RBM46Q8TBY0 533 aaKnown RBP12.83□□□□□ -0.36
LTN1-206ENST00000486427 WNT2BQ93097 391 aa12.83□□□□□ -0.36
LTN1-206ENST00000486427 PXYLP1Q8TE99 480 aa12.82□□□□□ -0.36
LTN1-206ENST00000486427 IRF6O14896 467 aa12.81□□□□□ -0.36
LTN1-206ENST00000486427 METTL3Q86U44 580 aaKnown RBP12.81□□□□□ -0.36
LTN1-206ENST00000486427 OATP04181 439 aa12.8□□□□□ -0.36
LTN1-206ENST00000486427 ANKK1Q8NFD2 765 aa12.8□□□□□ -0.36
LTN1-206ENST00000486427 PHOX2BQ99453 314 aa12.8□□□□□ -0.36
LTN1-206ENST00000486427 RCCD1A6NED2 376 aa12.79□□□□□ -0.36
LTN1-206ENST00000486427 BCAMP50895 628 aa12.79□□□□□ -0.36
LTN1-206ENST00000486427 SAMD7Q7Z3H4 446 aa12.79□□□□□ -0.36
LTN1-206ENST00000486427 CCDC102AQ96A19 550 aa12.79□□□□□ -0.36
LTN1-206ENST00000486427 MINK1Q8N4C8 1332 aaPredicted RBP12.79□□□□□ -0.36
LTN1-206ENST00000486427 THSD4Q6ZMP0 1018 aa12.78□□□□□ -0.36
LTN1-206ENST00000486427 NLRP7Q8WX94 980 aa12.77□□□□□ -0.37
LTN1-206ENST00000486427 SOWAHBA6NEL2 793 aa12.76□□□□□ -0.37
LTN1-206ENST00000486427 DNAJB2P25686 324 aa12.76□□□□□ -0.37
LTN1-206ENST00000486427 SWT1Q5T5J6 900 aaKnown RBP12.76□□□□□ -0.37
LTN1-206ENST00000486427 KRI1Q8N9T8 703 aaKnown RBP12.76□□□□□ -0.37
LTN1-206ENST00000486427 LRCH3Q96II8 777 aa12.75□□□□□ -0.37
LTN1-206ENST00000486427 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.74□□□□□ -0.37
LTN1-206ENST00000486427 TMEM134Q9H6X4 195 aa12.74□□□□□ -0.37
LTN1-206ENST00000486427 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.74□□□□□ -0.37
LTN1-206ENST00000486427 PTPN5P54829 565 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 128.8 ms