RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SPNS2Q8IVW8 549 aa7.84□□□□□ -1.15
VPS41-212ENST00000482217 PTPREP23469 700 aa7.83□□□□□ -1.16
VPS41-212ENST00000482217 POTEEQ6S8J3 1075 aa7.83□□□□□ -1.16
VPS41-212ENST00000482217 PCDHGA10Q9Y5H3 936 aa7.83□□□□□ -1.16
VPS41-212ENST00000482217 TK2O00142 265 aa7.82□□□□□ -1.16
VPS41-212ENST00000482217 KCNK17Q96T54 332 aa7.81□□□□□ -1.16
VPS41-212ENST00000482217 AXIN2Q9Y2T1 843 aa7.81□□□□□ -1.16
VPS41-212ENST00000482217 ANKRD13DQ6ZTN6 518 aa7.8□□□□□ -1.16
VPS41-212ENST00000482217 SLC4A5Q9BY07 1137 aa7.8□□□□□ -1.16
VPS41-212ENST00000482217 ADAM33Q9BZ11 813 aa7.8□□□□□ -1.16
VPS41-212ENST00000482217 PSEN2P49810 448 aa7.79□□□□□ -1.16
VPS41-212ENST00000482217 MMRN1Q13201 1228 aa7.78□□□□□ -1.16
VPS41-212ENST00000482217 ADGRD1Q6QNK2 874 aa7.78□□□□□ -1.16
VPS41-212ENST00000482217 DDX12PQ92771 950 aa7.78□□□□□ -1.16
VPS41-212ENST00000482217 PPP1R3GB7ZBB8 358 aa7.77□□□□□ -1.17
VPS41-212ENST00000482217 MLLT3P42568 568 aaPredicted RBP7.77□□□□□ -1.17
VPS41-212ENST00000482217 EN1Q05925 392 aaPredicted RBP7.76□□□□□ -1.17
VPS41-212ENST00000482217 DMRTA1Q5VZB9 504 aa7.76□□□□□ -1.17
VPS41-212ENST00000482217 ZC3H15Q8WU90 426 aaKnown RBP7.75□□□□□ -1.17
VPS41-212ENST00000482217 MYT1LQ9UL68 1186 aa7.75□□□□□ -1.17
VPS41-212ENST00000482217 C6orf132Q5T0Z8 1188 aa7.74□□□□□ -1.17
VPS41-212ENST00000482217 ZBED2Q9BTP6 218 aa7.74□□□□□ -1.17
VPS41-212ENST00000482217 GRXCR2A6NFK2 248 aa7.73□□□□□ -1.17
VPS41-212ENST00000482217 MAP3K7O43318 606 aa7.73□□□□□ -1.17
VPS41-212ENST00000482217 HRO43593 1189 aa7.73□□□□□ -1.17
VPS41-212ENST00000482217 VPS9D1Q9Y2B5 631 aa7.73□□□□□ -1.17
VPS41-212ENST00000482217 CERKQ8TCT0 537 aa7.72□□□□□ -1.17
VPS41-212ENST00000482217 RNF166Q96A37 237 aaPredicted RBP7.72□□□□□ -1.17
VPS41-212ENST00000482217 ONECUT3O60422 494 aaPredicted RBP7.71□□□□□ -1.18
VPS41-212ENST00000482217 RBM26Q5T8P6 1007 aaKnown RBP7.71□□□□□ -1.18
VPS41-212ENST00000482217 GPIHBP1Q8IV16 184 aa7.71□□□□□ -1.18
VPS41-212ENST00000482217 RBM33Q96EV2 1170 aaKnown RBP7.71□□□□□ -1.18
VPS41-212ENST00000482217 STAC3Q96MF2 364 aa7.71□□□□□ -1.18
VPS41-212ENST00000482217 ZMYND10O75800 440 aa7.7□□□□□ -1.18
VPS41-212ENST00000482217 OSBPP22059 807 aa7.7□□□□□ -1.18
VPS41-212ENST00000482217 NBPF3Q9H094 633 aa7.7□□□□□ -1.18
VPS41-212ENST00000482217 COL9A1P20849 921 aa7.69□□□□□ -1.18
VPS41-212ENST00000482217 RABGEF1Q9UJ41 708 aa7.69□□□□□ -1.18
VPS41-212ENST00000482217 BHMG1C9JSJ3 638 aaPredicted RBP7.67□□□□□ -1.18
VPS41-212ENST00000482217 TSR1Q2NL82 804 aaKnown RBP7.67□□□□□ -1.18
VPS41-212ENST00000482217 BARGINQ6ZT62 677 aa7.67□□□□□ -1.18
VPS41-212ENST00000482217 TRIM6-TRIM34B2RNG4 842 aa7.66□□□□□ -1.18
VPS41-212ENST00000482217 RBM27Q9P2N5 1060 aaKnown RBP7.66□□□□□ -1.18
VPS41-212ENST00000482217 TIMELESSQ9UNS1 1208 aa7.66□□□□□ -1.18
VPS41-212ENST00000482217 PRIM1P49642 420 aaKnown RBP7.65□□□□□ -1.18
VPS41-212ENST00000482217 LAPTM4BQ86VI4 370 aa7.65□□□□□ -1.18
VPS41-212ENST00000482217 MRPL50Q8N5N7 158 aaKnown RBP7.65□□□□□ -1.18
VPS41-212ENST00000482217 PROX2Q3B8N5 592 aa7.64□□□□□ -1.19
VPS41-212ENST00000482217 NUTM2FA1L443 756 aa7.63□□□□□ -1.19
VPS41-212ENST00000482217 GOLGA8CPA6NN73 597 aa7.63□□□□□ -1.19
VPS41-212ENST00000482217 PRSS12P56730 875 aa7.63□□□□□ -1.19
VPS41-212ENST00000482217 PACS2Q86VP3 889 aa7.63□□□□□ -1.19
VPS41-212ENST00000482217 GPR37O15354 613 aa7.62□□□□□ -1.19
VPS41-212ENST00000482217 CDCA7LQ96GN5 454 aa7.62□□□□□ -1.19
VPS41-212ENST00000482217 ARXQ96QS3 562 aa7.62□□□□□ -1.19
VPS41-212ENST00000482217 SLC24A3Q9HC58 644 aa7.62□□□□□ -1.19
VPS41-212ENST00000482217 KIAA1468Q9P260 1216 aa7.62□□□□□ -1.19
VPS41-212ENST00000482217 FCHSD2O94868 740 aa7.61□□□□□ -1.19
VPS41-212ENST00000482217 HCSTQ9UBK5 93 aa7.61□□□□□ -1.19
VPS41-212ENST00000482217 HIC1Q14526 733 aa7.6□□□□□ -1.19
VPS41-212ENST00000482217 KRI1Q8N9T8 703 aaKnown RBP7.6□□□□□ -1.19
VPS41-212ENST00000482217 AK7Q96M32 723 aa7.6□□□□□ -1.19
VPS41-212ENST00000482217 CDHR5Q9HBB8 845 aa7.6□□□□□ -1.19
VPS41-212ENST00000482217 NBPF26B4DH59 902 aa7.59□□□□□ -1.19
VPS41-212ENST00000482217 FAM98CQ17RN3 349 aaKnown RBP7.59□□□□□ -1.19
VPS41-212ENST00000482217 KCTD12Q96CX2 325 aaKnown RBP7.59□□□□□ -1.19
VPS41-212ENST00000482217 NPDC1Q9NQX5 325 aaPredicted RBP7.59□□□□□ -1.19
VPS41-212ENST00000482217 TSKSQ9UJT2 592 aa7.59□□□□□ -1.19
VPS41-212ENST00000482217 GNPATO15228 680 aa7.58□□□□□ -1.2
VPS41-212ENST00000482217 PTGDRQ13258 359 aa7.58□□□□□ -1.2
VPS41-212ENST00000482217 TTC13Q8NBP0 860 aa7.58□□□□□ -1.2
VPS41-212ENST00000482217 ANKK1Q8NFD2 765 aa7.58□□□□□ -1.2
VPS41-212ENST00000482217 WNT2BQ93097 391 aa7.58□□□□□ -1.2
VPS41-212ENST00000482217 MINK1Q8N4C8 1332 aaPredicted RBP7.57□□□□□ -1.2
VPS41-212ENST00000482217 MAP2K5Q13163 448 aa7.56□□□□□ -1.2
VPS41-212ENST00000482217 THSD4Q6ZMP0 1018 aa7.56□□□□□ -1.2
VPS41-212ENST00000482217 BRPF1P55201 1214 aaPredicted RBP7.55□□□□□ -1.2
VPS41-212ENST00000482217 ZFRQ96KR1 1074 aaKnown RBP7.55□□□□□ -1.2
VPS41-212ENST00000482217 SEPT9Q9UHD8 586 aaPredicted RBP7.55□□□□□ -1.2
VPS41-212ENST00000482217 PADI6Q6TGC4 694 aa7.54□□□□□ -1.2
VPS41-212ENST00000482217 TATDN2Q93075 761 aa7.54□□□□□ -1.2
VPS41-212ENST00000482217 FAM198AQ9UFP1 575 aa7.54□□□□□ -1.2
VPS41-212ENST00000482217 SOWAHBA6NEL2 793 aa7.53□□□□□ -1.2
VPS41-212ENST00000482217 NEUROD2Q15784 382 aa7.53□□□□□ -1.2
VPS41-212ENST00000482217 PNMA3Q9UL41 463 aa7.53□□□□□ -1.2
VPS41-212ENST00000482217 IRF6O14896 467 aa7.52□□□□□ -1.21
VPS41-212ENST00000482217 TRIM66O15016 1216 aa7.52□□□□□ -1.21
VPS41-212ENST00000482217 TMEM132AQ24JP5 1023 aa7.52□□□□□ -1.21
VPS41-212ENST00000482217 NYAP1Q6ZVC0 841 aa7.52□□□□□ -1.21
VPS41-212ENST00000482217 HDGFP51858 240 aaKnown RBP7.51□□□□□ -1.21
VPS41-212ENST00000482217 NUDT18Q6ZVK8 323 aa7.51□□□□□ -1.21
VPS41-212ENST00000482217 LRCH3Q96II8 777 aa7.51□□□□□ -1.21
VPS41-212ENST00000482217 FECHP22830 423 aa7.5□□□□□ -1.21
VPS41-212ENST00000482217 PTPN5P54829 565 aa7.5□□□□□ -1.21
VPS41-212ENST00000482217 CCDC102AQ96A19 550 aa7.5□□□□□ -1.21
VPS41-212ENST00000482217 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.5□□□□□ -1.21
VPS41-212ENST00000482217 SMAPO00193 183 aa7.49□□□□□ -1.21
VPS41-212ENST00000482217 PDE4DQ08499 809 aa7.49□□□□□ -1.21
VPS41-212ENST00000482217 RBM46Q8TBY0 533 aaKnown RBP7.49□□□□□ -1.21
VPS41-212ENST00000482217 NECTIN2Q92692 538 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms