RNA–Protein interactions for RNA: ENST00000455554.2

LINC02540-201, Transcript of long intergenic non-protein coding RNA 2540, humanhuman

TSL 3 BASIC

Gene LINC02540, Length 570 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02540-201ENST00000455554 ITGBL1O95965 494 aaPredicted RBP7.72□□□□□ -1.17
LINC02540-201ENST00000455554 KIAA1468Q9P260 1216 aa7.72□□□□□ -1.17
LINC02540-201ENST00000455554 SEPT9Q9UHD8 586 aaPredicted RBP7.72□□□□□ -1.17
LINC02540-201ENST00000455554 WBP1LQ9NX94 342 aa7.71□□□□□ -1.18
LINC02540-201ENST00000455554 SOWAHBA6NEL2 793 aa7.7□□□□□ -1.18
LINC02540-201ENST00000455554 ANKK1Q8NFD2 765 aa7.7□□□□□ -1.18
LINC02540-201ENST00000455554 LCE2BO14633 110 aa7.69□□□□□ -1.18
LINC02540-201ENST00000455554 TYW1BQ6NUM6 668 aa7.69□□□□□ -1.18
LINC02540-201ENST00000455554 FBXW7Q969H0 707 aa7.69□□□□□ -1.18
LINC02540-201ENST00000455554 ZFRQ96KR1 1074 aaKnown RBP7.69□□□□□ -1.18
LINC02540-201ENST00000455554 PHF14O94880 888 aa7.68□□□□□ -1.18
LINC02540-201ENST00000455554 C6orf132Q5T0Z8 1188 aa7.68□□□□□ -1.18
LINC02540-201ENST00000455554 DPYSL4O14531 572 aa7.67□□□□□ -1.18
LINC02540-201ENST00000455554 RBM33Q96EV2 1170 aaKnown RBP7.67□□□□□ -1.18
LINC02540-201ENST00000455554 LAPTM4BQ86VI4 370 aa7.66□□□□□ -1.18
LINC02540-201ENST00000455554 DCAF8L2P0C7V8 631 aa7.65□□□□□ -1.18
LINC02540-201ENST00000455554 CAMK2BQ13554 666 aa7.65□□□□□ -1.18
LINC02540-201ENST00000455554 C3orf80F5H4A9 247 aa7.64□□□□□ -1.19
LINC02540-201ENST00000455554 DDX12PQ92771 950 aa7.64□□□□□ -1.19
LINC02540-201ENST00000455554 TRIM6-TRIM34B2RNG4 842 aa7.63□□□□□ -1.19
LINC02540-201ENST00000455554 TSR1Q2NL82 804 aaKnown RBP7.63□□□□□ -1.19
LINC02540-201ENST00000455554 EPAS1Q99814 870 aa7.63□□□□□ -1.19
LINC02540-201ENST00000455554 TSKSQ9UJT2 592 aa7.63□□□□□ -1.19
LINC02540-201ENST00000455554 ONECUT3O60422 494 aaPredicted RBP7.62□□□□□ -1.19
LINC02540-201ENST00000455554 PRIM1P49642 420 aaKnown RBP7.62□□□□□ -1.19
LINC02540-201ENST00000455554 Q6ZNB5 142 aa7.62□□□□□ -1.19
LINC02540-201ENST00000455554 NYAP1Q6ZVC0 841 aa7.62□□□□□ -1.19
LINC02540-201ENST00000455554 FAM198AQ9UFP1 575 aa7.61□□□□□ -1.19
LINC02540-201ENST00000455554 HPS5Q9UPZ3 1129 aa7.61□□□□□ -1.19
LINC02540-201ENST00000455554 SMAPO00193 183 aa7.6□□□□□ -1.19
LINC02540-201ENST00000455554 KCNC4Q03721 635 aa7.6□□□□□ -1.19
LINC02540-201ENST00000455554 FAM98CQ17RN3 349 aaKnown RBP7.59□□□□□ -1.19
LINC02540-201ENST00000455554 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.58□□□□□ -1.2
LINC02540-201ENST00000455554 TSR3Q9UJK0 312 aaKnown RBP7.58□□□□□ -1.2
LINC02540-201ENST00000455554 LRCH3Q96II8 777 aa7.56□□□□□ -1.2
LINC02540-201ENST00000455554 EN1Q05925 392 aaPredicted RBP7.55□□□□□ -1.2
LINC02540-201ENST00000455554 NBR1Q14596 966 aa7.55□□□□□ -1.2
LINC02540-201ENST00000455554 TJAP1Q5JTD0 557 aa7.55□□□□□ -1.2
LINC02540-201ENST00000455554 SAMD7Q7Z3H4 446 aa7.53□□□□□ -1.2
LINC02540-201ENST00000455554 MAP3K7O43318 606 aa7.52□□□□□ -1.21
LINC02540-201ENST00000455554 PACS2Q86VP3 889 aa7.52□□□□□ -1.21
LINC02540-201ENST00000455554 ZNF516Q92618 1163 aa7.52□□□□□ -1.21
LINC02540-201ENST00000455554 GFRA3O60609 400 aa7.51□□□□□ -1.21
LINC02540-201ENST00000455554 PDIA6Q15084 440 aa7.51□□□□□ -1.21
LINC02540-201ENST00000455554 CDCA7LQ96GN5 454 aa7.51□□□□□ -1.21
LINC02540-201ENST00000455554 CDHR5Q9HBB8 845 aa7.51□□□□□ -1.21
LINC02540-201ENST00000455554 PPP4CP60510 307 aa7.5□□□□□ -1.21
LINC02540-201ENST00000455554 MTRQ99707 1265 aa7.5□□□□□ -1.21
LINC02540-201ENST00000455554 PRKD2Q9BZL6 878 aa7.5□□□□□ -1.21
LINC02540-201ENST00000455554 PPP1R18Q6NYC8 613 aa7.49□□□□□ -1.21
LINC02540-201ENST00000455554 NKX2-3Q8TAU0 364 aa7.49□□□□□ -1.21
LINC02540-201ENST00000455554 SPDYE16A6NNV3 312 aaPredicted RBP7.48□□□□□ -1.21
LINC02540-201ENST00000455554 PRSS12P56730 875 aa7.48□□□□□ -1.21
LINC02540-201ENST00000455554 TRAF7Q6Q0C0 670 aa7.48□□□□□ -1.21
LINC02540-201ENST00000455554 APLP1P51693 650 aa7.47□□□□□ -1.21
LINC02540-201ENST00000455554 LAPTM4AQ15012 233 aa7.46□□□□□ -1.22
LINC02540-201ENST00000455554 TATDN2Q93075 761 aa7.46□□□□□ -1.22
LINC02540-201ENST00000455554 PNMA3Q9UL41 463 aa7.46□□□□□ -1.22
LINC02540-201ENST00000455554 GRXCR2A6NFK2 248 aa7.45□□□□□ -1.22
LINC02540-201ENST00000455554 CERKQ8TCT0 537 aa7.45□□□□□ -1.22
LINC02540-201ENST00000455554 BBXQ8WY36 941 aaPredicted RBP7.45□□□□□ -1.22
LINC02540-201ENST00000455554 OSBPP22059 807 aa7.44□□□□□ -1.22
LINC02540-201ENST00000455554 NUDT18Q6ZVK8 323 aa7.44□□□□□ -1.22
LINC02540-201ENST00000455554 NBPF26B4DH59 902 aa7.43□□□□□ -1.22
LINC02540-201ENST00000455554 IL21Q9HBE4 155 aa7.43□□□□□ -1.22
LINC02540-201ENST00000455554 RNF40O75150 1001 aa7.42□□□□□ -1.22
LINC02540-201ENST00000455554 NRG2O14511 850 aaPredicted RBP7.41□□□□□ -1.22
LINC02540-201ENST00000455554 E2F4Q16254 413 aa7.41□□□□□ -1.22
LINC02540-201ENST00000455554 EMID1Q96A84 441 aaPredicted RBP7.41□□□□□ -1.22
LINC02540-201ENST00000455554 NPDC1Q9NQX5 325 aaPredicted RBP7.41□□□□□ -1.22
LINC02540-201ENST00000455554 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.41□□□□□ -1.22
LINC02540-201ENST00000455554 COPS2P61201 443 aa7.4□□□□□ -1.22
LINC02540-201ENST00000455554 ARIH1Q9Y4X5 557 aaPredicted RBP7.4□□□□□ -1.22
LINC02540-201ENST00000455554 SWT1Q5T5J6 900 aaKnown RBP7.39□□□□□ -1.23
LINC02540-201ENST00000455554 TTC13Q8NBP0 860 aa7.39□□□□□ -1.23
LINC02540-201ENST00000455554 SPRYD3Q8NCJ5 442 aa7.39□□□□□ -1.23
LINC02540-201ENST00000455554 HDGFP51858 240 aaKnown RBP7.38□□□□□ -1.23
LINC02540-201ENST00000455554 PADI6Q6TGC4 694 aa7.38□□□□□ -1.23
LINC02540-201ENST00000455554 RBM27Q9P2N5 1060 aaKnown RBP7.38□□□□□ -1.23
LINC02540-201ENST00000455554 V9GY48 417 aaPredicted RBP7.38□□□□□ -1.23
LINC02540-201ENST00000455554 TRIM67Q6ZTA4 783 aa7.37□□□□□ -1.23
LINC02540-201ENST00000455554 WDR70Q9NW82 654 aa7.36□□□□□ -1.23
LINC02540-201ENST00000455554 PDZRN3Q9UPQ7 1066 aa7.36□□□□□ -1.23
LINC02540-201ENST00000455554 NECTIN2Q92692 538 aa7.35□□□□□ -1.23
LINC02540-201ENST00000455554 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.35□□□□□ -1.23
LINC02540-201ENST00000455554 TLL1O43897 1013 aa7.33□□□□□ -1.24
LINC02540-201ENST00000455554 ZNF787Q6DD87 383 aa7.33□□□□□ -1.24
LINC02540-201ENST00000455554 ZNF775Q96BV0 537 aaPredicted RBP7.33□□□□□ -1.24
LINC02540-201ENST00000455554 EYA1Q99502 592 aa7.33□□□□□ -1.24
LINC02540-201ENST00000455554 POTECB2RU33 542 aa7.32□□□□□ -1.24
LINC02540-201ENST00000455554 SLF2Q8IX21 1173 aa7.32□□□□□ -1.24
LINC02540-201ENST00000455554 RNF223E7ERA6 249 aa7.31□□□□□ -1.24
LINC02540-201ENST00000455554 PPEF1O14829 653 aaPredicted RBP7.31□□□□□ -1.24
LINC02540-201ENST00000455554 ZPR1O75312 459 aa7.31□□□□□ -1.24
LINC02540-201ENST00000455554 GGCXP38435 758 aa7.31□□□□□ -1.24
LINC02540-201ENST00000455554 BLOC1S3Q6QNY0 202 aa7.31□□□□□ -1.24
LINC02540-201ENST00000455554 MLLT3P42568 568 aaPredicted RBP7.3□□□□□ -1.24
LINC02540-201ENST00000455554 SLC4A3P48751 1232 aa7.29□□□□□ -1.24
LINC02540-201ENST00000455554 FAM161AQ3B820 660 aa7.28□□□□□ -1.24
LINC02540-201ENST00000455554 PAXIP1Q6ZW49 1069 aaPredicted RBP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms