RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 DCBLD2Q96PD2 775 aa3.49□□□□□ -1.85
CCDC88A-208ENST00000444458 PHF8Q9UPP1 1060 aa3.49□□□□□ -1.85
CCDC88A-208ENST00000444458 CABP2Q9NPB3 220 aa3.49□□□□□ -1.85
CCDC88A-208ENST00000444458 NCKAP5LQ9HCH0 1330 aa3.49□□□□□ -1.85
CCDC88A-208ENST00000444458 IRF6O14896 467 aa3.49□□□□□ -1.85
CCDC88A-208ENST00000444458 KCNA1Q09470 495 aa3.49□□□□□ -1.85
CCDC88A-208ENST00000444458 AMHR2Q16671 573 aa3.48□□□□□ -1.85
CCDC88A-208ENST00000444458 EFCAB3Q8N7B9 438 aa3.48□□□□□ -1.85
CCDC88A-208ENST00000444458 SLC39A7Q92504 469 aa3.48□□□□□ -1.85
CCDC88A-208ENST00000444458 ARIH1Q9Y4X5 557 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-208ENST00000444458 GRXCR2A6NFK2 248 aa3.48□□□□□ -1.85
CCDC88A-208ENST00000444458 DPYSL4O14531 572 aa3.48□□□□□ -1.85
CCDC88A-208ENST00000444458 GIGYF2Q6Y7W6 1299 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-208ENST00000444458 PRM3Q9NNZ6 103 aa3.48□□□□□ -1.85
CCDC88A-208ENST00000444458 SOX12O15370 315 aa3.47□□□□□ -1.85
CCDC88A-208ENST00000444458 RFX1P22670 979 aa3.47□□□□□ -1.85
CCDC88A-208ENST00000444458 AMOTL2Q9Y2J4 779 aa3.47□□□□□ -1.85
CCDC88A-208ENST00000444458 SPDYE16A6NNV3 312 aaPredicted RBP3.47□□□□□ -1.85
CCDC88A-208ENST00000444458 BRD1O95696 1058 aa3.47□□□□□ -1.85
CCDC88A-208ENST00000444458 MFSD10Q14728 455 aa3.47□□□□□ -1.85
CCDC88A-208ENST00000444458 FAM177A1Q8N128 213 aaPredicted RBP3.47□□□□□ -1.85
CCDC88A-208ENST00000444458 GNPATO15228 680 aa3.47□□□□□ -1.85
CCDC88A-208ENST00000444458 SH3D19Q5HYK7 790 aa3.46□□□□□ -1.85
CCDC88A-208ENST00000444458 GOLGA2Q08379 1002 aa3.46□□□□□ -1.86
CCDC88A-208ENST00000444458 POLR3EQ9NVU0 708 aa3.46□□□□□ -1.86
CCDC88A-208ENST00000444458 IVNS1ABPQ9Y6Y0 642 aa3.46□□□□□ -1.86
CCDC88A-208ENST00000444458 SPDYE5A6NIY4 337 aa3.46□□□□□ -1.86
CCDC88A-208ENST00000444458 FNBP4Q8N3X1 1017 aaPredicted RBP3.46□□□□□ -1.86
CCDC88A-208ENST00000444458 KIF12Q96FN5 646 aa3.46□□□□□ -1.86
CCDC88A-208ENST00000444458 COG6Q9Y2V7 657 aa3.46□□□□□ -1.86
CCDC88A-208ENST00000444458 ABL2P42684 1182 aa3.45□□□□□ -1.86
CCDC88A-208ENST00000444458 CRISPLD2Q9H0B8 497 aa3.45□□□□□ -1.86
CCDC88A-208ENST00000444458 IRX5P78411 483 aaPredicted RBP3.45□□□□□ -1.86
CCDC88A-208ENST00000444458 PPP1R15BQ5SWA1 713 aa3.45□□□□□ -1.86
CCDC88A-208ENST00000444458 FCHSD2O94868 740 aa3.45□□□□□ -1.86
CCDC88A-208ENST00000444458 TIE1P35590 1138 aa3.45□□□□□ -1.86
CCDC88A-208ENST00000444458 CAMK2BQ13554 666 aa3.45□□□□□ -1.86
CCDC88A-208ENST00000444458 HIC1Q14526 733 aa3.45□□□□□ -1.86
CCDC88A-208ENST00000444458 SKIV2LQ15477 1246 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-208ENST00000444458 FBXO22Q8NEZ5 403 aa3.44□□□□□ -1.86
CCDC88A-208ENST00000444458 PPP1R1BQ9UD71 204 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-208ENST00000444458 MS4A1P11836 297 aa3.44□□□□□ -1.86
CCDC88A-208ENST00000444458 PBXIP1Q96AQ6 731 aa3.44□□□□□ -1.86
CCDC88A-208ENST00000444458 USTQ9Y2C2 406 aa3.44□□□□□ -1.86
CCDC88A-208ENST00000444458 ARID4BQ4LE39 1312 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-208ENST00000444458 SND1Q7KZF4 910 aaKnown RBP eCLIP3.43□□□□□ -1.86
CCDC88A-208ENST00000444458 GDPD2Q9HCC8 539 aa3.43□□□□□ -1.86
CCDC88A-208ENST00000444458 CLCN1P35523 988 aa3.43□□□□□ -1.86
CCDC88A-208ENST00000444458 PROCA1Q8NCQ7 364 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-208ENST00000444458 GLMNQ92990 594 aa3.43□□□□□ -1.86
CCDC88A-208ENST00000444458 PDIA6Q15084 440 aa3.43□□□□□ -1.86
CCDC88A-208ENST00000444458 DISP3Q9P2K9 1392 aa3.43□□□□□ -1.86
CCDC88A-208ENST00000444458 GPR37O15354 613 aa3.42□□□□□ -1.86
CCDC88A-208ENST00000444458 MDM2Q00987 491 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-208ENST00000444458 MAMSTRQ6ZN01 415 aa3.42□□□□□ -1.86
CCDC88A-208ENST00000444458 CDAN1Q8IWY9 1227 aa3.42□□□□□ -1.86
CCDC88A-208ENST00000444458 FAM9AQ8IZU1 332 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-208ENST00000444458 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-208ENST00000444458 BEGAINQ9BUH8 593 aa3.42□□□□□ -1.86
CCDC88A-208ENST00000444458 SNRKQ9NRH2 765 aa3.42□□□□□ -1.86
CCDC88A-208ENST00000444458 BMP2KQ9NSY1 1161 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-208ENST00000444458 CANXP27824 592 aaKnown RBP3.41□□□□□ -1.86
CCDC88A-208ENST00000444458 MAP3K9P80192 1104 aa3.41□□□□□ -1.86
CCDC88A-208ENST00000444458 NCLP19338 710 aaKnown RBP3.41□□□□□ -1.86
CCDC88A-208ENST00000444458 FECHP22830 423 aa3.41□□□□□ -1.86
CCDC88A-208ENST00000444458 SSTR3P32745 418 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-208ENST00000444458 ATN1P54259 1190 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-208ENST00000444458 MMRN1Q13201 1228 aa3.41□□□□□ -1.86
CCDC88A-208ENST00000444458 B4GALNT3Q6L9W6 998 aa3.41□□□□□ -1.86
CCDC88A-208ENST00000444458 FAM163AQ96GL9 167 aaPredicted RBP3.41□□□□□ -1.86
CCDC88A-208ENST00000444458 VRTNQ9H8Y1 702 aa3.41□□□□□ -1.86
CCDC88A-208ENST00000444458 BANK1Q8NDB2 785 aa3.4□□□□□ -1.86
CCDC88A-208ENST00000444458 TMEM121BQ9BXQ6 578 aaPredicted RBP3.4□□□□□ -1.86
CCDC88A-208ENST00000444458 GPCPD1Q9NPB8 672 aa3.4□□□□□ -1.86
CCDC88A-208ENST00000444458 CARNS1A5YM72 827 aa3.4□□□□□ -1.86
CCDC88A-208ENST00000444458 TMEM259Q4ZIN3 620 aa3.4□□□□□ -1.86
CCDC88A-208ENST00000444458 POTEB3A0JP26 581 aa3.4□□□□□ -1.87
CCDC88A-208ENST00000444458 CLK2P49760 499 aaKnown RBP3.4□□□□□ -1.87
CCDC88A-208ENST00000444458 POTEBQ6S5H4 581 aa3.4□□□□□ -1.87
CCDC88A-208ENST00000444458 BRD2P25440 801 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 RFC5P40937 340 aa3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 POM121CA8CG34 1229 aa3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 PAK3O75914 559 aaPredicted RBP3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 CCDC125Q86Z20 511 aa3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 MRRFQ96E11 262 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 DHX37Q8IY37 1157 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 BCL11AQ9H165 835 aa3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 EMILIN3Q9NT22 766 aa3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 SMARCA5O60264 1052 aaPredicted RBP3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 CDCA8Q53HL2 280 aa3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 HDGFL1Q5TGJ6 251 aa3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 TMC2Q8TDI7 906 aa3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 DRC1Q96MC2 740 aa3.39□□□□□ -1.87
CCDC88A-208ENST00000444458 SPNS2Q8IVW8 549 aa3.38□□□□□ -1.87
CCDC88A-208ENST00000444458 DDX12PQ92771 950 aa3.38□□□□□ -1.87
CCDC88A-208ENST00000444458 REPIN1Q9BWE0 567 aaKnown RBP3.38□□□□□ -1.87
CCDC88A-208ENST00000444458 KRTAP3-3Q9BYR6 98 aa3.38□□□□□ -1.87
CCDC88A-208ENST00000444458 KRTAP3-2Q9BYR7 98 aa3.38□□□□□ -1.87
CCDC88A-208ENST00000444458 TBC1D12O60347 775 aa3.38□□□□□ -1.87
CCDC88A-208ENST00000444458 CCER1Q8TC90 406 aaPredicted RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms